Analysis of interatomic Contacts of Structural Units in PDB entry:
1F38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F38 entry

There are 4 chains in PDB entry 1F38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1101VAL 1286
B
 MSE 2101VAL 2286
C
 MSE 3101VAL 3286
D
 MSE 4101VAL 4286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1F38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1103 1107Right-handed 310
Helix 2
2
A
1118 1130Right-handed alpha
Helix 3
3
A
1145 1153Right-handed alpha
Helix 4
4
A
1164 1178Right-handed alpha
Helix 5
5
A
1190 1196Right-handed alpha
Helix 6
6
A
1212 1223Right-handed alpha
Helix 7
7
A
1236 1250Right-handed alpha
Helix 8
8
B
2103 2107Right-handed 310
Helix 9
9
B
2118 2130Right-handed alpha
Helix 10
10
B
2145 2153Right-handed alpha
Helix 11
11
B
2164 2178Right-handed alpha
Helix 12
12
B
2190 2196Right-handed alpha
Helix 13
13
B
2212 2223Right-handed alpha
Helix 14
14
B
2236 2250Right-handed alpha
Helix 15
15
C
3103 3107Right-handed 310
Helix 16
16
C
3118 3130Right-handed alpha
Helix 17
17
C
3145 3153Right-handed alpha
Helix 18
18
C
3164 3178Right-handed alpha
Helix 19
19
C
3190 3197Right-handed alpha
Helix 20
20
C
3212 3223Right-handed alpha
Helix 21
21
C
3236 3250Right-handed alpha
Helix 22
22
D
4103 4107Right-handed 310
Helix 23
23
D
4118 4130Right-handed alpha
Helix 24
24
D
4145 4153Right-handed alpha
Helix 25
25
D
4164 4178Right-handed alpha
Helix 26
26
D
4190 4197Right-handed alpha
Helix 27
27
D
4212 4223Right-handed alpha
Helix 28
28
D
4236 4250Right-handed alpha
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There are 2 sheets in PDB entry 1F38. Click on sheet of interest to get list of strands forming it: A, B,

There are 18 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4184 4188first strand
Strand 2
D
4157 4162parallel
Strand 3
D
4136 4140parallel
Strand 4
D
4201 4206parallel
Strand 5
D
4224 4234parallel
Strand 6
D
4279 4284anti-parallel
Strand 7
D
4254 4266anti-parallel
Strand 8
D
4271 4275anti-parallel
Strand 9
D
4254 4266anti-parallel
Strand 10
A
1254 1266anti-parallel
Strand 11
A
1271 1275anti-parallel
Strand 12
A
1254 1266anti-parallel
Strand 13
A
1279 1284anti-parallel
Strand 14
A
1224 1234anti-parallel
Strand 15
A
1201 1206parallel
Strand 16
A
1136 1140parallel
Strand 17
A
1157 1162parallel
Strand 18
A
1184 1188parallel
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There are 18 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3184 3188first strand
Strand 2
C
3157 3162parallel
Strand 3
C
3136 3140parallel
Strand 4
C
3201 3206parallel
Strand 5
C
3224 3234parallel
Strand 6
C
3279 3284anti-parallel
Strand 7
C
3254 3266anti-parallel
Strand 8
C
3271 3275anti-parallel
Strand 9
C
3254 3266anti-parallel
Strand 10
B
2254 2266anti-parallel
Strand 11
B
2271 2275anti-parallel
Strand 12
B
2254 2266anti-parallel
Strand 13
B
2279 2284anti-parallel
Strand 14
B
2224 2234anti-parallel
Strand 15
B
2201 2206parallel
Strand 16
B
2136 2140parallel
Strand 17
B
2157 2162parallel
Strand 18
B
2184 2188parallel
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