Analysis of interatomic Contacts of Structural Units in PDB entry:
1FDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FDY entry

There are 4 chains in PDB entry 1FDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4GLU 295
B
 ASN 4GLN 294
C
 ASN 4GLN 294
D
 ASN 4GLN 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 1FDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
51 53Right-handed 310
Helix 3
3
A
56 69Right-handed alpha
Helix 4
4
A
85 97Right-handed alpha
Helix 5
5
A
115 129Right-handed alpha
Helix 6
6
A
140 143Right-handed alpha
Helix 7
7
A
149 157Right-handed alpha
Helix 8
8
A
171 180Right-handed alpha
Helix 9
9
A
191 200Right-handed 310
Helix 10
10
A
208 225Right-handed 310
Helix 11
11
A
229 249Right-handed alpha
Helix 12
12
A
251 261Right-handed alpha
Helix 13
13
A
279 294Right-handed 310
Helix 14
14
B
24 36Right-handed alpha
Helix 15
15
B
51 53Right-handed 310
Helix 16
16
B
56 70Right-handed alpha
Helix 17
17
B
85 98Right-handed alpha
Helix 18
18
B
115 128Right-handed alpha
Helix 19
19
B
140 143Right-handed alpha
Helix 20
20
B
149 157Right-handed alpha
Helix 21
21
B
171 180Right-handed alpha
Helix 22
22
B
191 200Right-handed 310
Helix 23
23
B
208 225Right-handed 310
Helix 24
24
B
229 249Right-handed alpha
Helix 25
25
B
251 261Right-handed alpha
Helix 26
26
B
279 292Right-handed alpha
Helix 27
27
C
24 37Right-handed alpha
Helix 28
28
C
47 49Right-handed 310
Helix 29
29
C
51 53Right-handed 310
Helix 30
30
C
56 70Right-handed alpha
Helix 31
31
C
85 98Right-handed alpha
Helix 32
32
C
115 129Right-handed alpha
Helix 33
33
C
140 143Right-handed alpha
Helix 34
34
C
149 157Right-handed alpha
Helix 35
35
C
171 180Right-handed alpha
Helix 36
36
C
191 199Right-handed 310
Helix 37
37
C
209 226Right-handed 310
Helix 38
38
C
229 249Right-handed alpha
Helix 39
39
C
251 261Right-handed alpha
Helix 40
40
C
279 292Right-handed alpha
Helix 41
41
D
24 36Right-handed alpha
Helix 42
42
D
51 53Right-handed 310
Helix 43
43
D
56 70Right-handed alpha
Helix 44
44
D
85 98Right-handed alpha
Helix 45
45
D
115 129Right-handed alpha
Helix 46
46
D
140 143Right-handed alpha
Helix 47
47
D
149 157Right-handed alpha
Helix 48
48
D
172 180Right-handed alpha
Helix 49
49
D
191 200Right-handed 310
Helix 50
50
D
209 225Right-handed 310
Helix 51
51
D
229 249Right-handed alpha
Helix 52
52
D
251 261Right-handed alpha
Helix 53
53
D
279 292Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1FDY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
8 11parallel
Strand 3
A
41 44parallel
Strand 4
A
75 79parallel
Strand 5
A
102 106parallel
Strand 6
A
133 138parallel
Strand 7
A
161 166parallel
Strand 8
A
185 188parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
8 11parallel
Strand 3
B
41 44parallel
Strand 4
B
75 79parallel
Strand 5
B
102 106parallel
Strand 6
B
133 138parallel
Strand 7
B
161 166parallel
Strand 8
B
185 188parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 207first strand
Strand 2
C
8 11parallel
Strand 3
C
41 44parallel
Strand 4
C
75 79parallel
Strand 5
C
102 106parallel
Strand 6
C
133 138parallel
Strand 7
C
161 166parallel
Strand 8
C
185 188parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
205 207first strand
Strand 2
D
8 11parallel
Strand 3
D
41 44parallel
Strand 4
D
75 79parallel
Strand 5
D
102 106parallel
Strand 6
D
133 138parallel
Strand 7
D
161 166parallel
Strand 8
D
185 188parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il