Analysis of interatomic Contacts of Structural Units in PDB entry:
1FNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FNX entry

There are 2 chains in PDB entry 1FNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
U 0 U 9
H
MET 35GLN 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 1FNX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
H
51 61Right-handed alpha
Helix 2
2
H
89 100Right-handed alpha
Helix 3
3
H
137 147Right-handed alpha
Helix 4
4
H
175 185Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1FNX. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
67 70first strand
Strand 2
H
82 86anti-parallel
Strand 3
H
41 44anti-parallel
Strand 4
H
109 114anti-parallel
Strand 5
H
101 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
151 157first strand
Strand 2
H
168 173anti-parallel
Strand 3
H
127 130anti-parallel
Strand 4
H
199 202anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il