Analysis of interatomic Contacts of Structural Units in PDB entry:
1FP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FP7 entry

There are 2 chains in PDB entry 1FP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1007GLY 1557
B
 ILE 1008GLY 1557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1FP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1018 1025Right-handed alpha
Helix 2
2
A
1029 1031Right-handed 310
Helix 3
3
A
1045 1051Right-handed alpha
Helix 4
4
A
1073 1088Right-handed alpha
Helix 5
5
A
1102 1107Right-handed alpha
Helix 6
6
A
1121 1127Right-handed alpha
Helix 7
7
A
1131 1153Right-handed alpha
Helix 8
8
A
1160 1164Right-handed 310
Helix 9
9
A
1174 1178Right-handed 310
Helix 10
10
A
1203 1210Right-handed alpha
Helix 11
11
A
1214 1222Right-handed alpha
Helix 12
12
A
1243 1251Right-handed alpha
Helix 13
13
A
1284 1295Right-handed alpha
Helix 14
14
A
1308 1316Right-handed alpha
Helix 15
15
A
1316 1322Right-handed alpha
Helix 16
16
A
1334 1341Right-handed alpha
Helix 17
17
A
1352 1373Right-handed alpha
Helix 18
18
A
1388 1398Right-handed alpha
Helix 19
19
A
1414 1419Right-handed alpha
Helix 20
20
A
1419 1433Right-handed alpha
Helix 21
21
A
1446 1458Right-handed alpha
Helix 22
22
A
1467 1477Right-handed alpha
Helix 23
23
A
1478 1481Right-handed 310
Helix 24
24
B
1018 1025Right-handed alpha
Helix 25
25
B
1045 1051Right-handed alpha
Helix 26
26
B
1075 1084Right-handed alpha
Helix 27
27
B
1102 1107Right-handed alpha
Helix 28
28
B
1121 1126Right-handed alpha
Helix 29
29
B
1132 1154Right-handed alpha
Helix 30
30
B
1160 1164Right-handed 310
Helix 31
31
B
1174 1178Right-handed 310
Helix 32
32
B
1203 1211Right-handed alpha
Helix 33
33
B
1217 1223Right-handed alpha
Helix 34
34
B
1239 1242Right-handed 310
Helix 35
35
B
1243 1251Right-handed alpha
Helix 36
36
B
1284 1294Right-handed alpha
Helix 37
37
B
1308 1316Right-handed alpha
Helix 38
38
B
1316 1321Right-handed alpha
Helix 39
39
B
1333 1340Right-handed alpha
Helix 40
40
B
1344 1348Right-handed 310
Helix 41
41
B
1353 1359Right-handed alpha
Helix 42
42
B
1359 1373Right-handed alpha
Helix 43
43
B
1388 1399Right-handed alpha
Helix 44
44
B
1408 1415Right-handed alpha
Helix 45
45
B
1414 1419Right-handed alpha
Helix 46
46
B
1419 1433Right-handed alpha
Helix 47
47
B
1446 1457Right-handed alpha
Helix 48
48
B
1467 1481Right-handed alpha
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There are 14 sheets in PDB entry 1FP7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1035first strand
Strand 2
A
1041 1043anti-parallel
Strand 3
A
1258 1261anti-parallel
Strand 4
A
1267 1270anti-parallel
Strand 5
A
1092 1096parallel
Strand 6
A
1297 1305parallel
Strand 7
A
1058 1064parallel
Strand 8
A
1327 1332parallel
Strand 9
A
1377 1381parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1168 1170first strand
Strand 2
A
1197 1199parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1180 1182first strand
Strand 2
A
1193 1195anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1229first strand
Strand 2
A
1235 1237anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1463 1466first strand
Strand 2
A
1510 1513parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1487 1490first strand
Strand 2
A
1523 1527parallel
Strand 3
A
1518 1519anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1034 1035first strand
Strand 2
B
1041 1042anti-parallel
Strand 3
B
1258 1260anti-parallel
Strand 4
B
1268 1270anti-parallel
Strand 5
B
1092 1096parallel
Strand 6
B
1297 1299parallel
Strand 7
B
1058 1059parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1061 1063first strand
Strand 2
B
1328 1330parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1168 1170first strand
Strand 2
B
1197 1199parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1180 1182first strand
Strand 2
B
1193 1195anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1226 1229first strand
Strand 2
B
1235 1237anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1464 1466first strand
Strand 2
B
1511 1513parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1488 1489first strand
Strand 2
B
1524 1526parallel
Strand 3
B
1517 1518anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1548 1549first strand
Strand 2
B
1554 1555anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il