Analysis of interatomic Contacts of Structural Units in PDB entry:
1FYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FYF entry

There are 2 chains in PDB entry 1FYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 242GLU 642
B
 ARG 242GLU 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1FYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
243 251Right-handed alpha
Helix 2
2
A
267 288Right-handed alpha
Helix 3
3
A
301 308Right-handed alpha
Helix 4
4
A
308 314Right-handed alpha
Helix 5
5
A
315 317Right-handed 310
Helix 6
6
A
333 342Right-handed alpha
Helix 7
7
A
348 351Right-handed 310
Helix 8
8
A
366 370Right-handed 310
Helix 9
9
A
389 391Right-handed 310
Helix 10
10
A
392 411Right-handed alpha
Helix 11
11
A
430 448Right-handed alpha
Helix 12
12
A
488 493Right-handed alpha
Helix 13
13
A
518 530Right-handed alpha
Helix 14
14
A
548 550Right-handed 310
Helix 15
15
A
551 565Right-handed alpha
Helix 16
16
A
577 588Right-handed alpha
Helix 17
17
A
597 604Right-handed alpha
Helix 18
18
A
621 634Right-handed alpha
Helix 19
19
B
243 251Right-handed alpha
Helix 20
20
B
267 288Right-handed alpha
Helix 21
21
B
301 307Right-handed alpha
Helix 22
22
B
308 314Right-handed alpha
Helix 23
23
B
315 317Right-handed 310
Helix 24
24
B
333 342Right-handed alpha
Helix 25
25
B
348 351Right-handed 310
Helix 26
26
B
366 370Right-handed 310
Helix 27
27
B
389 391Right-handed 310
Helix 28
28
B
392 411Right-handed alpha
Helix 29
29
B
430 448Right-handed alpha
Helix 30
30
B
488 493Right-handed alpha
Helix 31
31
B
518 530Right-handed alpha
Helix 32
32
B
548 550Right-handed 310
Helix 33
33
B
551 565Right-handed alpha
Helix 34
34
B
577 588Right-handed alpha
Helix 35
35
B
597 604Right-handed alpha
Helix 36
36
B
621 634Right-handed alpha
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There are 10 sheets in PDB entry 1FYF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
265 266anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
353 362parallel
Strand 3
A
378 388anti-parallel
Strand 4
A
508 517anti-parallel
Strand 5
A
477 486anti-parallel
Strand 6
A
465 471anti-parallel
Strand 7
A
417 421anti-parallel
Strand 8
A
453 455parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
325 329anti-parallel
Strand 3
A
319 322anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
504 505anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 572first strand
Strand 2
A
542 546parallel
Strand 3
A
592 596parallel
Strand 4
A
605 610anti-parallel
Strand 5
A
615 620anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
265 266anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
353 362parallel
Strand 3
B
378 388anti-parallel
Strand 4
B
508 517anti-parallel
Strand 5
B
477 486anti-parallel
Strand 6
B
465 471anti-parallel
Strand 7
B
417 421anti-parallel
Strand 8
B
452 455parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 300first strand
Strand 2
B
325 329anti-parallel
Strand 3
B
319 322anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
497 498first strand
Strand 2
B
504 505anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 572first strand
Strand 2
B
542 546parallel
Strand 3
B
592 596parallel
Strand 4
B
605 610anti-parallel
Strand 5
B
615 620anti-parallel
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