Analysis of interatomic Contacts of Structural Units in PDB entry:
1G8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G8A entry

There is 1 chain in PDB entry 1G8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1G8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 64Right-handed alpha
Helix 2
2
A
86 96Right-handed alpha
Helix 3
3
A
107 119Right-handed alpha
Helix 4
4
A
133 138Right-handed 310
Helix 5
5
A
155 167Right-handed alpha
Helix 6
6
A
181 183Right-handed 310
Helix 7
7
A
188 202Right-handed alpha
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There are 2 sheets in PDB entry 1G8A. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
12 16anti-parallel
Strand 3
A
23 27anti-parallel
Strand 4
A
46 50anti-parallel
Strand 5
A
40 43anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
100 105parallel
Strand 3
A
76 80parallel
Strand 4
A
144 149parallel
Strand 5
A
168 179parallel
Strand 6
A
219 225anti-parallel
Strand 7
A
205 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il