Analysis of interatomic Contacts of Structural Units in PDB entry:
1GAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GAJ entry

There is 1 chain in PDB entry 1GAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5GLU 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1GAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 54Right-handed alpha
Helix 2
2
A
75 80Right-handed alpha
Helix 3
3
A
91 96Right-handed alpha
Helix 4
4
A
98 105Right-handed alpha
Helix 5
5
A
106 108Right-handed 310
Helix 6
6
A
113 118Right-handed alpha
Helix 7
7
A
119 121Right-handed 310
Helix 8
8
A
127 141Right-handed alpha
Helix 9
9
A
143 147Right-handed 310
Helix 10
10
A
151 154Right-handed 310
Helix 11
11
A
155 169Right-handed alpha
Helix 12
12
A
185 202Right-handed alpha
Helix 13
13
A
212 217Right-handed alpha
Helix 14
14
A
237 247Right-handed alpha
Helix 15
15
A
247 254Right-handed alpha
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There are 2 sheets in PDB entry 1GAJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 31first strand
Strand 2
A
6 17anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
69 70anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
174 178parallel
Strand 3
A
205 209parallel
Strand 4
A
35 39parallel
Strand 5
A
223 227parallel
Strand 6
A
230 235anti-parallel
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