Analysis of interatomic Contacts of Structural Units in PDB entry:
1GAX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GAX entry

There are 4 chains in PDB entry 1GAX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	G 901	A 975
D	G 901	A 975
A	MET 1	GLY 862
B	MET 1	GLY 862

There are 70 helices in PDB entry 1GAX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	11	Right-handed 310
Helix 2	2	A	12	23	Right-handed alpha
Helix 3	3	A	50	69	Right-handed alpha
Helix 4	4	A	84	93	Right-handed alpha
Helix 5	5	A	108	132	Right-handed alpha
Helix 6	6	A	137	141	Right-handed 310
Helix 7	7	A	146	162	Right-handed alpha
Helix 8	8	A	184	186	Right-handed 310
Helix 9	9	A	217	221	Right-handed 310
Helix 10	10	A	272	275	Right-handed 310
Helix 11	11	A	276	286	Right-handed alpha
Helix 12	12	A	315	327	Right-handed alpha
Helix 13	13	A	362	377	Right-handed alpha
Helix 14	14	A	385	396	Right-handed alpha
Helix 15	15	A	427	431	Right-handed 310
Helix 16	16	A	454	460	Right-handed alpha
Helix 17	17	A	464	468	Right-handed 310
Helix 18	18	A	473	479	Right-handed alpha
Helix 19	19	A	490	492	Right-handed 310
Helix 20	20	A	495	507	Right-handed alpha
Helix 21	21	A	538	547	Right-handed alpha
Helix 22	22	A	547	559	Right-handed alpha
Helix 23	23	A	568	593	Right-handed alpha
Helix 24	24	A	604	626	Right-handed alpha
Helix 25	25	A	629	645	Right-handed alpha
Helix 26	26	A	648	659	Right-handed alpha
Helix 27	27	A	661	680	Right-handed alpha
Helix 28	28	A	683	696	Right-handed alpha
Helix 29	29	A	699	703	Right-handed 310
Helix 30	30	A	712	737	Right-handed alpha
Helix 31	31	A	752	758	Right-handed alpha
Helix 32	32	A	758	767	Right-handed alpha
Helix 33	33	A	797	824	Right-handed alpha
Helix 34	34	A	835	861	Right-handed alpha
Helix 35	35	B	8	11	Right-handed 310
Helix 36	36	B	12	23	Right-handed alpha
Helix 37	37	B	50	70	Right-handed alpha
Helix 38	38	B	84	93	Right-handed alpha
Helix 39	39	B	106	132	Right-handed alpha
Helix 40	40	B	137	141	Right-handed 310
Helix 41	41	B	146	162	Right-handed alpha
Helix 42	42	B	184	186	Right-handed 310
Helix 43	43	B	217	221	Right-handed 310
Helix 44	44	B	231	235	Right-handed 310
Helix 45	45	B	276	287	Right-handed alpha
Helix 46	46	B	317	322	Right-handed alpha
Helix 47	47	B	322	327	Right-handed alpha
Helix 48	48	B	362	377	Right-handed alpha
Helix 49	49	B	385	396	Right-handed alpha
Helix 50	50	B	427	431	Right-handed 310
Helix 51	51	B	454	460	Right-handed alpha
Helix 52	52	B	464	468	Right-handed 310
Helix 53	53	B	474	479	Right-handed alpha
Helix 54	54	B	488	492	Right-handed 310
Helix 55	55	B	495	505	Right-handed alpha
Helix 56	56	B	538	546	Right-handed alpha
Helix 57	57	B	547	559	Right-handed alpha
Helix 58	58	B	569	594	Right-handed alpha
Helix 59	59	B	604	627	Right-handed alpha
Helix 60	60	B	629	642	Right-handed alpha
Helix 61	61	B	648	659	Right-handed alpha
Helix 62	62	B	661	680	Right-handed alpha
Helix 63	63	B	683	696	Right-handed alpha
Helix 64	64	B	699	703	Right-handed 310
Helix 65	65	B	712	737	Right-handed alpha
Helix 66	66	B	752	758	Right-handed alpha
Helix 67	67	B	758	767	Right-handed alpha
Helix 68	68	B	797	825	Right-handed alpha
Helix 69	69	B	827	832	Right-handed alpha
Helix 70	70	B	833	861	Right-handed alpha

There are 23 sheets in PDB entry 1GAX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	73	77	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	142	143	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	358	361	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	172	176	anti-parallel
Strand 3	A	353	355	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	A	342	344	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	214	first strand
Strand 2	A	193	201	anti-parallel
Strand 3	A	331	339	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	256	first strand
Strand 2	A	226	228	parallel
Strand 3	A	268	270	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	514	518	parallel
Strand 3	A	485	488	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	415	417	anti-parallel
Strand 3	A	446	448	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	522	first strand
Strand 2	A	565	566	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	770	first strand
Strand 2	A	744	750	parallel
Strand 3	A	786	791	anti-parallel
Strand 4	A	778	782	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	73	77	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	142	143	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	169	first strand
Strand 2	B	358	361	anti-parallel
Strand 3	B	400	401	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	354	355	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	190	first strand
Strand 2	B	342	344	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	195	first strand
Strand 2	B	337	339	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	214	first strand
Strand 2	B	198	201	anti-parallel
Strand 3	B	331	334	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	256	first strand
Strand 2	B	226	228	parallel
Strand 3	B	268	270	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	512	517	parallel
Strand 3	B	482	487	parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	424	first strand
Strand 2	B	415	417	anti-parallel
Strand 3	B	446	448	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	522	first strand
Strand 2	B	565	566	parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	769	771	first strand
Strand 2	B	745	750	parallel
Strand 3	B	786	791	anti-parallel
Strand 4	B	778	782	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GAX

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GAX