Analysis of interatomic Contacts of Structural Units in PDB entry:
1GCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GCK entry

There are 2 chains in PDB entry 1GCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 382
B
 MET 501LEU 882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1GCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
15 23Right-handed alpha
Helix 3
3
A
23 28Right-handed alpha
Helix 4
4
A
46 60Right-handed alpha
Helix 5
5
A
70 86Right-handed alpha
Helix 6
6
A
90 92Right-handed 310
Helix 7
7
A
98 112Right-handed alpha
Helix 8
8
A
126 133Right-handed alpha
Helix 9
9
A
145 149Right-handed 310
Helix 10
10
A
153 159Right-handed alpha
Helix 11
11
A
182 197Right-handed alpha
Helix 12
12
A
217 221Right-handed 310
Helix 13
13
A
232 236Right-handed alpha
Helix 14
14
A
238 242Right-handed 310
Helix 15
15
A
249 262Right-handed alpha
Helix 16
16
A
269 281Right-handed alpha
Helix 17
17
A
281 311Right-handed alpha
Helix 18
18
A
333 344Right-handed alpha
Helix 19
19
A
352 355Right-handed 310
Helix 20
20
A
367 381Right-handed alpha
Helix 21
21
B
505 510Right-handed alpha
Helix 22
22
B
514 528Right-handed alpha
Helix 23
23
B
546 559Right-handed alpha
Helix 24
24
B
570 586Right-handed alpha
Helix 25
25
B
590 592Right-handed 310
Helix 26
26
B
598 610Right-handed alpha
Helix 27
27
B
626 635Right-handed alpha
Helix 28
28
B
645 649Right-handed 310
Helix 29
29
B
653 659Right-handed alpha
Helix 30
30
B
682 696Right-handed alpha
Helix 31
31
B
732 736Right-handed alpha
Helix 32
32
B
738 742Right-handed 310
Helix 33
33
B
749 764Right-handed alpha
Helix 34
34
B
768 781Right-handed alpha
Helix 35
35
B
781 810Right-handed alpha
Helix 36
36
B
833 844Right-handed alpha
Helix 37
37
B
852 855Right-handed 310
Helix 38
38
B
867 882Right-handed alpha
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There are 6 sheets in PDB entry 1GCK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
346 347parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
244 247anti-parallel
Strand 3
A
226 231anti-parallel
Strand 4
A
199 203parallel
Strand 5
A
165 171parallel
Strand 6
A
117 122parallel
Strand 7
A
138 143parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
359 363anti-parallel
Strand 3
A
349 350anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
534 535first strand
Strand 2
B
846 847parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
594 597first strand
Strand 2
B
744 747anti-parallel
Strand 3
B
726 731anti-parallel
Strand 4
B
699 703parallel
Strand 5
B
665 671parallel
Strand 6
B
617 622parallel
Strand 7
B
638 643parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
822 826first strand
Strand 2
B
859 863anti-parallel
Strand 3
B
849 850anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il