Analysis of interatomic Contacts of Structural Units in PDB entry:
1GCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GCP entry

There are 4 chains in PDB entry 1GCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 596HIS 660
B
 MET 594HIS 660
C
 LYS 596HIS 660
D
 LYS 596HIS 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1GCP

There are 3 sheets in PDB entry 1GCP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 651first strand
Strand 2
A
636 641anti-parallel
Strand 3
A
624 629anti-parallel
Strand 4
A
597 599anti-parallel
Strand 5
A
655 657anti-parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
655 657first strand
Strand 2
B
596 599anti-parallel
Strand 3
B
624 631anti-parallel
Strand 4
B
636 641anti-parallel
Strand 5
B
647 651anti-parallel
Strand 6
B
636 641anti-parallel
Strand 7
B
624 631anti-parallel
Strand 8
C
624 631anti-parallel
Strand 9
C
636 641anti-parallel
Strand 10
C
647 651anti-parallel
Strand 11
C
636 641anti-parallel
Strand 12
C
624 631anti-parallel
Strand 13
C
597 599anti-parallel
Strand 14
C
655 657anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
655 657first strand
Strand 2
D
597 599anti-parallel
Strand 3
D
624 629anti-parallel
Strand 4
D
636 641anti-parallel
Strand 5
D
647 651anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il