Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1GD2 entry
There are 10 chains in PDB entry 1GD2
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
A -7 | C 6 |
B
|
A -7 | C 6 |
C
|
A -7 | C 6 |
D
|
A -7 | C 6 |
E
|
ASP 75 | LEU 139 |
F
|
GLU 77 | LYS 140 |
G
|
GLN 76 | LEU 139 |
H
|
GLN 76 | LEU 139 |
I
|
ARG 82 | LYS 140 |
J
|
THR 106 | SER 116 |
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There are 8
helices in PDB entry 1GD2. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | E
| 79 |
126 | Right-handed alpha |
Helix 2 |
2 | E
| 127 |
139 | Right-handed alpha |
Helix 3 |
3 | F
| 79 |
140 | Right-handed alpha |
Helix 4 |
4 | G
| 79 |
138 | Right-handed alpha |
Helix 5 |
5 | H
| 79 |
136 | Right-handed alpha |
Helix 6 |
6 | I
| 106 |
126 | Right-handed alpha |
Helix 7 |
7 | I
| 129 |
140 | Right-handed alpha |
Helix 8 |
8 | J
| 108 |
113 | Right-handed alpha |
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There are no sheets in PDB entry
1GD2
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il