Analysis of interatomic Contacts of Structural Units in PDB entry:
1GGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GGF entry

There are 4 chains in PDB entry 1GGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 27	ALA 753
B	ASP 27	ALA 753
C	ASP 27	ALA 753
D	ASP 27	ALA 753

There are133 helices in PDB entry 1GGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	52	57	Right-handed alpha
Helix 2	2	A	62	68	Right-handed alpha
Helix 3	3	A	107	119	Right-handed alpha
Helix 4	4	A	150	154	Right-handed 310
Helix 5	5	A	210	212	Right-handed 310
Helix 6	6	A	213	222	Right-handed alpha
Helix 7	7	A	236	246	Right-handed alpha
Helix 8	8	A	249	258	Right-handed alpha
Helix 9	9	A	259	262	Right-handed 310
Helix 10	10	A	265	269	Right-handed 310
Helix 11	11	A	303	314	Right-handed alpha
Helix 12	12	A	316	329	Right-handed alpha
Helix 13	13	A	344	346	Right-handed 310
Helix 14	14	A	381	386	Right-handed alpha
Helix 15	15	A	405	412	Right-handed alpha
Helix 16	16	A	415	424	Right-handed alpha
Helix 17	17	A	427	431	Right-handed 310
Helix 18	18	A	431	435	Right-handed 310
Helix 19	19	A	498	502	Right-handed 310
Helix 20	20	A	505	514	Right-handed alpha
Helix 21	21	A	516	533	Right-handed alpha
Helix 22	22	A	536	549	Right-handed alpha
Helix 23	23	A	551	562	Right-handed alpha
Helix 24	24	A	567	572	Right-handed alpha
Helix 25	25	A	585	589	Right-handed 310
Helix 26	26	A	612	626	Right-handed alpha
Helix 27	27	A	658	662	Right-handed 310
Helix 28	28	A	671	675	Right-handed 310
Helix 29	29	A	678	691	Right-handed alpha
Helix 30	30	A	700	709	Right-handed 310
Helix 31	31	A	725	738	Right-handed alpha
Helix 32	32	A	741	743	Right-handed 310
Helix 33	33	A	744	749	Right-handed alpha
Helix 34	34	B	52	57	Right-handed alpha
Helix 35	35	B	62	68	Right-handed alpha
Helix 36	36	B	107	119	Right-handed alpha
Helix 37	37	B	150	154	Right-handed 310
Helix 38	38	B	210	212	Right-handed 310
Helix 39	39	B	213	222	Right-handed alpha
Helix 40	40	B	236	246	Right-handed alpha
Helix 41	41	B	249	258	Right-handed alpha
Helix 42	42	B	259	262	Right-handed 310
Helix 43	43	B	265	269	Right-handed 310
Helix 44	44	B	303	314	Right-handed alpha
Helix 45	45	B	316	328	Right-handed alpha
Helix 46	46	B	344	346	Right-handed 310
Helix 47	47	B	381	386	Right-handed alpha
Helix 48	48	B	405	412	Right-handed alpha
Helix 49	49	B	415	424	Right-handed alpha
Helix 50	50	B	427	431	Right-handed 310
Helix 51	51	B	431	435	Right-handed 310
Helix 52	52	B	498	502	Right-handed 310
Helix 53	53	B	505	514	Right-handed alpha
Helix 54	54	B	516	533	Right-handed alpha
Helix 55	55	B	536	551	Right-handed alpha
Helix 56	56	B	551	562	Right-handed alpha
Helix 57	57	B	567	572	Right-handed alpha
Helix 58	58	B	585	589	Right-handed 310
Helix 59	59	B	612	626	Right-handed alpha
Helix 60	60	B	658	662	Right-handed 310
Helix 61	61	B	671	675	Right-handed 310
Helix 62	62	B	678	691	Right-handed alpha
Helix 63	63	B	700	709	Right-handed 310
Helix 64	64	B	725	738	Right-handed alpha
Helix 65	65	B	741	743	Right-handed 310
Helix 66	66	B	744	749	Right-handed alpha
Helix 67	67	C	52	57	Right-handed alpha
Helix 68	68	C	62	68	Right-handed alpha
Helix 69	69	C	107	118	Right-handed alpha
Helix 70	70	C	150	154	Right-handed 310
Helix 71	71	C	210	212	Right-handed 310
Helix 72	72	C	213	222	Right-handed alpha
Helix 73	73	C	236	245	Right-handed alpha
Helix 74	74	C	246	248	Right-handed 310
Helix 75	75	C	249	258	Right-handed alpha
Helix 76	76	C	259	262	Right-handed 310
Helix 77	77	C	265	269	Right-handed 310
Helix 78	78	C	303	314	Right-handed alpha
Helix 79	79	C	316	328	Right-handed alpha
Helix 80	80	C	344	346	Right-handed 310
Helix 81	81	C	381	386	Right-handed alpha
Helix 82	82	C	405	414	Right-handed alpha
Helix 83	83	C	415	424	Right-handed alpha
Helix 84	84	C	427	431	Right-handed 310
Helix 85	85	C	431	435	Right-handed 310
Helix 86	86	C	498	502	Right-handed 310
Helix 87	87	C	505	514	Right-handed alpha
Helix 88	88	C	516	533	Right-handed alpha
Helix 89	89	C	536	549	Right-handed alpha
Helix 90	90	C	551	562	Right-handed alpha
Helix 91	91	C	567	573	Right-handed alpha
Helix 92	92	C	585	589	Right-handed 310
Helix 93	93	C	612	626	Right-handed alpha
Helix 94	94	C	658	662	Right-handed 310
Helix 95	95	C	672	677	Right-handed alpha
Helix 96	96	C	678	691	Right-handed alpha
Helix 97	97	C	700	707	Right-handed 310
Helix 98	98	C	725	738	Right-handed alpha
Helix 99	99	C	741	743	Right-handed 310
Helix 100	100	C	744	749	Right-handed alpha
Helix 101	101	D	52	57	Right-handed alpha
Helix 102	102	D	62	68	Right-handed alpha
Helix 103	103	D	107	118	Right-handed alpha
Helix 104	104	D	150	154	Right-handed 310
Helix 105	105	D	210	212	Right-handed 310
Helix 106	106	D	213	222	Right-handed alpha
Helix 107	107	D	236	246	Right-handed alpha
Helix 108	108	D	249	258	Right-handed alpha
Helix 109	109	D	259	262	Right-handed 310
Helix 110	110	D	265	269	Right-handed 310
Helix 111	111	D	303	314	Right-handed alpha
Helix 112	112	D	316	329	Right-handed alpha
Helix 113	113	D	344	346	Right-handed 310
Helix 114	114	D	381	386	Right-handed alpha
Helix 115	115	D	405	412	Right-handed alpha
Helix 116	116	D	415	424	Right-handed alpha
Helix 117	117	D	427	431	Right-handed 310
Helix 118	118	D	431	435	Right-handed 310
Helix 119	119	D	498	502	Right-handed 310
Helix 120	120	D	505	515	Right-handed alpha
Helix 121	121	D	516	533	Right-handed alpha
Helix 122	122	D	536	548	Right-handed alpha
Helix 123	123	D	551	562	Right-handed alpha
Helix 124	124	D	567	572	Right-handed alpha
Helix 125	125	D	585	589	Right-handed 310
Helix 126	126	D	612	626	Right-handed alpha
Helix 127	127	D	658	662	Right-handed 310
Helix 128	128	D	671	675	Right-handed 310
Helix 129	129	D	678	691	Right-handed alpha
Helix 130	130	D	700	707	Right-handed 310
Helix 131	131	D	725	738	Right-handed alpha
Helix 132	132	D	741	743	Right-handed 310
Helix 133	133	D	744	749	Right-handed alpha

There are 17 sheets in PDB entry 1GGF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	C	453	454	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	C	488	494	anti-parallel
Strand 4	B	96	97	anti-parallel

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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	277	280	anti-parallel
Strand 3	A	286	295	anti-parallel
Strand 4	A	333	342	anti-parallel
Strand 5	A	367	377	anti-parallel
Strand 6	A	131	140	anti-parallel
Strand 7	A	160	167	anti-parallel
Strand 8	A	184	191	anti-parallel
Strand 9	A	194	201	anti-parallel
Strand 10	A	271	272	anti-parallel
Strand 11	A	286	295	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	C	72	73	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	A	488	495	anti-parallel
Strand 3	B	488	495	anti-parallel
Strand 4	C	95	97	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	653	first strand
Strand 2	A	629	634	parallel
Strand 3	A	602	606	parallel
Strand 4	A	664	667	parallel
Strand 5	A	695	698	parallel
Strand 6	A	718	721	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	641	first strand
Strand 2	A	647	649	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	D	453	454	parallel

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There are 11 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	277	280	anti-parallel
Strand 3	B	286	295	anti-parallel
Strand 4	B	333	342	anti-parallel
Strand 5	B	368	377	anti-parallel
Strand 6	B	131	140	anti-parallel
Strand 7	B	160	167	anti-parallel
Strand 8	B	184	191	anti-parallel
Strand 9	B	194	201	anti-parallel
Strand 10	B	271	272	anti-parallel
Strand 11	B	286	295	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	D	72	73	parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	653	first strand
Strand 2	B	629	634	parallel
Strand 3	B	602	606	parallel
Strand 4	B	664	667	parallel
Strand 5	B	695	698	parallel
Strand 6	B	718	721	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	641	first strand
Strand 2	B	647	649	anti-parallel

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There are 11 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	286	295	anti-parallel
Strand 4	C	333	342	anti-parallel
Strand 5	C	367	377	anti-parallel
Strand 6	C	131	140	anti-parallel
Strand 7	C	160	167	anti-parallel
Strand 8	C	184	191	anti-parallel
Strand 9	C	194	201	anti-parallel
Strand 10	C	271	272	anti-parallel
Strand 11	C	286	295	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	653	first strand
Strand 2	C	629	634	parallel
Strand 3	C	602	606	parallel
Strand 4	C	664	667	parallel
Strand 5	C	695	698	parallel
Strand 6	C	718	721	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	641	first strand
Strand 2	C	647	650	anti-parallel

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There are 11 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	277	280	anti-parallel
Strand 3	D	286	295	anti-parallel
Strand 4	D	333	342	anti-parallel
Strand 5	D	367	377	anti-parallel
Strand 6	D	131	140	anti-parallel
Strand 7	D	160	167	anti-parallel
Strand 8	D	184	191	anti-parallel
Strand 9	D	194	201	anti-parallel
Strand 10	D	271	272	anti-parallel
Strand 11	D	286	295	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	652	653	first strand
Strand 2	D	629	634	parallel
Strand 3	D	602	606	parallel
Strand 4	D	664	667	parallel
Strand 5	D	695	698	parallel
Strand 6	D	718	721	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GGF