Analysis of interatomic Contacts of Structural Units in PDB entry:
1GGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GGR entry

There are 2 chains in PDB entry 1GGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19LYS 168
B
 MET 301GLU 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1GGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 36Right-handed 310
Helix 2
2
A
38 43Right-handed alpha
Helix 3
3
A
94 99Right-handed 310
Helix 4
4
A
123 131Right-handed alpha
Helix 5
5
A
142 146Right-handed 310
Helix 6
6
B
315 327Right-handed alpha
Helix 7
7
B
346 351Right-handed alpha
Helix 8
8
B
369 384Right-handed alpha
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There are 4 sheets in PDB entry 1GGR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
162 167anti-parallel
Strand 3
A
148 151anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
86 90anti-parallel
Strand 5
A
136 140anti-parallel
Strand 6
A
48 54anti-parallel
Strand 7
A
28 31anti-parallel
Strand 8
A
155 156anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
118 122anti-parallel
Strand 3
A
103 105anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 307first strand
Strand 2
B
360 366anti-parallel
Strand 3
B
332 337anti-parallel
Strand 4
B
340 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il