Analysis of interatomic Contacts of Structural Units in PDB entry:
1GGT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GGT entry

There are 2 chains in PDB entry 1GGT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 8	PRO 729
B	PHE 8	ARG 727

There are 24 helices in PDB entry 1GGT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	A1	A	59	63	Right-handed alpha
Helix 2	A2	A	176	178	Right-handed 310
Helix 3	A3	A	198	207	Right-handed alpha
Helix 4	A4	A	234	244	Right-handed alpha
Helix 5	A5	A	255	265	Right-handed alpha
Helix 6	A6	A	295	304	Right-handed alpha
Helix 7	A7	A	314	327	Right-handed alpha
Helix 8	A8	A	414	419	Right-handed alpha
Helix 9	A9	A	428	436	Right-handed alpha
Helix 10	A10	A	478	481	Right-handed alpha
Helix 11	A11	A	488	499	Right-handed alpha
Helix 12	A12	A	592	597	Right-handed alpha
Helix 13	B1	B	59	63	Right-handed alpha
Helix 14	B2	B	176	178	Right-handed 310
Helix 15	B3	B	198	207	Right-handed alpha
Helix 16	B4	B	234	244	Right-handed alpha
Helix 17	B5	B	255	265	Right-handed alpha
Helix 18	B6	B	295	304	Right-handed alpha
Helix 19	B7	B	314	327	Right-handed alpha
Helix 20	B8	B	414	419	Right-handed alpha
Helix 21	B9	B	428	436	Right-handed alpha
Helix 22	B10	B	478	481	Right-handed alpha
Helix 23	B11	B	488	499	Right-handed alpha
Helix 24	B12	B	592	597	Right-handed alpha

There are 18 sheets in PDB entry 1GGT. Click on sheet of interest to get list of strands forming it: B1A, B1B, B2A, B2C, B2B, B2D, B3A, B3B, B4A, B4B, B5A, B5B, B6A, B6B, B7A, B7B, B8A, B8B,

There are 4 strands in B1A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	53	first strand
Strand 2	A	82	88	anti-parallel
Strand 3	A	141	148	anti-parallel
Strand 4	A	131	138	anti-parallel

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There are 4 strands in B1B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	53	first strand
Strand 2	B	82	88	anti-parallel
Strand 3	B	141	148	anti-parallel
Strand 4	B	131	138	anti-parallel

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There are 4 strands in B2A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	155	165	anti-parallel
Strand 3	A	99	104	anti-parallel
Strand 4	A	116	120	anti-parallel

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There are 4 strands in B2C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	171	first strand
Strand 2	B	155	165	anti-parallel
Strand 3	B	99	104	anti-parallel
Strand 4	B	116	120	anti-parallel

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There are 5 strands in B2B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	180	183	parallel
Strand 3	A	155	165	anti-parallel
Strand 4	A	99	104	anti-parallel
Strand 5	A	116	120	anti-parallel

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There are 5 strands in B2D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	180	183	parallel
Strand 3	B	155	165	anti-parallel
Strand 4	B	99	104	anti-parallel
Strand 5	B	116	120	anti-parallel

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There are 2 strands in B3A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	216	first strand
Strand 2	A	219	226	anti-parallel

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There are 2 strands in B3B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	216	first strand
Strand 2	B	219	226	anti-parallel

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There are 2 strands in B4A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	309	312	parallel

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There are 2 strands in B4B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	309	312	parallel

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There are 3 strands in B5A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	439	443	parallel
Strand 3	A	451	456	anti-parallel

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There are 3 strands in B5B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	439	443	parallel
Strand 3	B	451	456	anti-parallel

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There are 6 strands in B6A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	464	467	anti-parallel
Strand 3	A	332	337	anti-parallel
Strand 4	A	376	380	anti-parallel
Strand 5	A	391	400	anti-parallel
Strand 6	A	407	413	anti-parallel

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There are 6 strands in B6B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	476	first strand
Strand 2	B	464	467	anti-parallel
Strand 3	B	332	337	anti-parallel
Strand 4	B	376	380	anti-parallel
Strand 5	B	391	400	anti-parallel
Strand 6	B	407	413	anti-parallel

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There are 8 strands in B7A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	524	first strand
Strand 2	A	534	541	anti-parallel
Strand 3	A	583	588	anti-parallel
Strand 4	A	564	577	anti-parallel
Strand 5	A	547	558	anti-parallel
Strand 6	A	603	612	anti-parallel
Strand 7	A	617	626	anti-parallel
Strand 8	A	518	524	parallel

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There are 8 strands in B7B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	524	first strand
Strand 2	B	534	541	anti-parallel
Strand 3	B	583	588	anti-parallel
Strand 4	B	564	577	anti-parallel
Strand 5	B	547	558	anti-parallel
Strand 6	B	603	612	anti-parallel
Strand 7	B	617	626	anti-parallel
Strand 8	B	518	524	parallel

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There are 8 strands in B8A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	637	first strand
Strand 2	A	646	653	anti-parallel
Strand 3	A	688	695	anti-parallel
Strand 4	A	676	683	anti-parallel
Strand 5	A	660	668	anti-parallel
Strand 6	A	704	710	anti-parallel
Strand 7	A	715	722	anti-parallel
Strand 8	A	633	637	parallel

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There are 8 strands in B8B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	637	first strand
Strand 2	B	646	653	anti-parallel
Strand 3	B	688	695	anti-parallel
Strand 4	B	676	683	anti-parallel
Strand 5	B	660	668	anti-parallel
Strand 6	B	704	710	anti-parallel
Strand 7	B	715	722	anti-parallel
Strand 8	B	633	637	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GGT

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GGT