Analysis of interatomic Contacts of Structural Units in PDB entry:
1GOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GOP entry

There is 1 chain in PDB entry 1GOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 901ILE 1092
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1GOP

There are 6 sheets in PDB entry 1GOP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
911 913first strand
Strand 2
A
927 932anti-parallel
Strand 3
A
941 944anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
936 937first strand
Strand 2
A
959 960anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 975first strand
Strand 2
A
985 988anti-parallel
Strand 3
A
1002 1006anti-parallel
Strand 4
A
1011 1013anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
994 997first strand
Strand 2
A
1019 1022anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1071 1073anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1066 1067first strand
Strand 2
A
1090 1091anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il