Analysis of interatomic Contacts of Structural Units in PDB entry:
1GOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GOT entry

There are 3 chains in PDB entry 1GOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ASN 343
B
 SER 2ASN 340
G
 LEU 9GLU 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1GOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 28Right-handed alpha
Helix 2
2
A
42 53Right-handed alpha
Helix 3
3
A
59 86Right-handed alpha
Helix 4
4
A
94 108Right-handed 310
Helix 5
5
A
117 128Right-handed alpha
Helix 6
6
A
130 141Right-handed alpha
Helix 7
7
A
148 159Right-handed alpha
Helix 8
8
A
167 171Right-handed alpha
Helix 9
9
A
204 206Right-handed 310
Helix 10
10
A
208 211Right-handed 310
Helix 11
11
A
223 227Right-handed 310
Helix 12
12
A
238 250Right-handed alpha
Helix 13
13
A
253 255Right-handed 310
Helix 14
14
A
267 275Right-handed alpha
Helix 15
15
A
279 281Right-handed 310
Helix 16
16
A
292 306Right-handed alpha
Helix 17
17
A
325 340Right-handed alpha
Helix 18
18
B
3 25Right-handed alpha
Helix 19
19
B
30 33Right-handed alpha
Helix 20
20
G
11 27Right-handed alpha
Helix 21
21
G
33 50Right-handed alpha
Helix 22
22
G
52 55Right-handed alpha
Helix 23
23
G
59 61Right-handed 310
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There are 8 sheets in PDB entry 1GOT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
259 265parallel
Strand 3
A
216 222parallel
Strand 4
A
29 36parallel
Strand 5
A
190 196parallel
Strand 6
A
181 187anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
89 94anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
134 140anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
166 170anti-parallel
Strand 4
B
175 180anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
218 222anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
293 298anti-parallel
Strand 4
B
304 309anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 51first strand
Strand 2
B
336 339anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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