Analysis of interatomic Contacts of Structural Units in PDB entry:
1GQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GQC entry

There are 2 chains in PDB entry 1GQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ALA 242
B
 SER 1LEU 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1GQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed 310
Helix 2
2
A
28 39Right-handed alpha
Helix 3
3
A
52 62Right-handed alpha
Helix 4
4
A
75 85Right-handed alpha
Helix 5
5
A
103 117Right-handed alpha
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
163 167Right-handed 310
Helix 8
8
A
180 185Right-handed alpha
Helix 9
9
A
192 199Right-handed alpha
Helix 10
10
A
202 208Right-handed alpha
Helix 11
11
A
226 242Right-handed alpha
Helix 12
12
B
18 21Right-handed 310
Helix 13
13
B
29 39Right-handed alpha
Helix 14
14
B
52 62Right-handed alpha
Helix 15
15
B
75 87Right-handed alpha
Helix 16
16
B
103 117Right-handed alpha
Helix 17
17
B
130 135Right-handed alpha
Helix 18
18
B
163 167Right-handed 310
Helix 19
19
B
180 186Right-handed alpha
Helix 20
20
B
187 189Right-handed 310
Helix 21
21
B
192 199Right-handed alpha
Helix 22
22
B
202 208Right-handed alpha
Helix 23
23
B
226 240Right-handed alpha
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There are 5 sheets in PDB entry 1GQC. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
45 50parallel
Strand 3
A
3 8parallel
Strand 4
A
91 94parallel
Strand 5
A
169 179anti-parallel
Strand 6
A
122 129anti-parallel
Strand 7
A
212 216parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
45 50parallel
Strand 3
A
3 8parallel
Strand 4
A
91 94parallel
Strand 5
A
169 179anti-parallel
Strand 6
A
141 144anti-parallel
Strand 7
A
150 154anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
45 50parallel
Strand 3
B
3 8parallel
Strand 4
B
91 94parallel
Strand 5
B
169 179anti-parallel
Strand 6
B
122 129anti-parallel
Strand 7
B
212 216parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
27 28anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
150 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il