Analysis of interatomic Contacts of Structural Units in PDB entry:
1GTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GTR entry

There are 2 chains in PDB entry 1GTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 2 A 76
A
 THR 8THR 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1GTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
41 56Right-handed alpha
Helix 3
3
A
70 72Right-handed 310
Helix 4
4
A
75 87Right-handed alpha
Helix 5
5
A
99 115Right-handed 310
Helix 6
6
A
126 133Right-handed alpha
Helix 7
7
A
150 162Right-handed alpha
Helix 8
8
A
183 185Right-handed 310
Helix 9
9
A
211 222Right-handed alpha
Helix 10
10
A
231 233Right-handed 310
Helix 11
11
A
236 246Right-handed 310
Helix 12
12
A
270 278Right-handed alpha
Helix 13
13
A
293 299Right-handed alpha
Helix 14
14
A
303 313Right-handed alpha
Helix 15
15
A
324 338Right-handed alpha
Helix 16
16
A
372 374Right-handed 310
Helix 17
17
A
389 391Right-handed 310
Helix 18
18
A
481 483Right-handed 310
Helix 19
19
A
488 490Right-handed 310
Helix 20
20
A
505 509Right-handed 310
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There are 7 sheets in PDB entry 1GTR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
60 63parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
171 174anti-parallel
Strand 3
A
189 193anti-parallel
Strand 4
A
207 209anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 230first strand
Strand 2
A
254 258parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
515 518parallel
Strand 3
A
522 526anti-parallel
Strand 4
A
536 543anti-parallel
Strand 5
A
465 472parallel
Strand 6
A
496 503anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 388first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
432 435parallel
Strand 4
A
419 423anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 366first strand
Strand 2
A
376 381anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
416 418anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il