Analysis of interatomic Contacts of Structural Units in PDB entry:
1GV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GV3 entry

There are 2 chains in PDB entry 1GV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 25ARG 238
B
SER 25ARG 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1GV3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
55 65Right-handed alpha
Helix 2
2
A
65 80Right-handed alpha
Helix 3
3
A
81 87Right-handed 310
Helix 4
4
A
88 95Right-handed alpha
Helix 5
5
A
96 99Right-handed 310
Helix 6
6
A
103 123Right-handed alpha
Helix 7
7
A
133 145Right-handed alpha
Helix 8
8
A
146 161Right-handed alpha
Helix 9
9
A
187 192Right-handed 310
Helix 10
10
A
202 205Right-handed 310
Helix 11
11
A
206 211Right-handed alpha
Helix 12
12
A
213 221Right-handed alpha
Helix 13
13
A
222 224Right-handed 310
Helix 14
14
A
226 237Right-handed alpha
Helix 15
15
B
55 65Right-handed alpha
Helix 16
16
B
65 80Right-handed alpha
Helix 17
17
B
81 85Right-handed 310
Helix 18
18
B
88 95Right-handed alpha
Helix 19
19
B
96 99Right-handed 310
Helix 20
20
B
103 123Right-handed alpha
Helix 21
21
B
133 145Right-handed alpha
Helix 22
22
B
146 161Right-handed alpha
Helix 23
23
B
187 192Right-handed 310
Helix 24
24
B
202 205Right-handed 310
Helix 25
25
B
206 211Right-handed alpha
Helix 26
26
B
213 222Right-handed alpha
Helix 27
27
B
226 237Right-handed alpha
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There are 2 sheets in PDB entry 1GV3. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
177 183first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
194 200anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
177 183first strand
Strand 2
B
165 171anti-parallel
Strand 3
B
194 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il