Analysis of interatomic Contacts of Structural Units in PDB entry:
1GZN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GZN entry

There is 1 chain in PDB entry 1GZN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 146GLU 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1GZN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
148 150Right-handed 310
Helix 2
2
A
202 207Right-handed alpha
Helix 3
3
A
236 245Right-handed alpha
Helix 4
4
A
248 269Right-handed alpha
Helix 5
5
A
277 279Right-handed 310
Helix 6
6
A
318 325Right-handed alpha
Helix 7
7
A
329 346Right-handed alpha
Helix 8
8
A
357 365Right-handed alpha
Helix 9
9
A
376 385Right-handed alpha
Helix 10
10
A
388 392Right-handed 310
Helix 11
11
A
399 405Right-handed alpha
Helix 12
12
A
406 410Right-handed 310
Helix 13
13
A
413 419Right-handed alpha
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There are 2 sheets in PDB entry 1GZN. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 160first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
224 230anti-parallel
Strand 5
A
215 220anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
281 283first strand
Strand 2
A
289 291anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il