Analysis of interatomic Contacts of Structural Units in PDB entry:
1GZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GZW entry

There are 3 chains in PDB entry 1GZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLU 15
A
 LEU 17ASP 134
B
 ALA 1ASP 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1GZW

There are 3 sheets in PDB entry 1GZW. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
54 64anti-parallel
Strand 3
A
40 51anti-parallel
Strand 4
A
32 37anti-parallel
Strand 5
A
117 122anti-parallel
Strand 6
A
5 11anti-parallel
Strand 7
B
5 11anti-parallel
Strand 8
B
117 122anti-parallel
Strand 9
B
32 37anti-parallel
Strand 10
B
40 51anti-parallel
Strand 11
B
54 64anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
54 64anti-parallel
Strand 3
A
72 73anti-parallel
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There are 10 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
95 99anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
16 23anti-parallel
Strand 5
A
126 133anti-parallel
Strand 6
B
126 134anti-parallel
Strand 7
B
16 23anti-parallel
Strand 8
B
83 91anti-parallel
Strand 9
B
95 99anti-parallel
Strand 10
B
105 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il