Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1HDD entry
There are 4 chains in PDB entry 1HDD
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
T 1 | A 21 |
B
|
A 22 | A 42 |
C
|
ARG 3 | SER 59 |
D
|
ARG 3 | SER 59 |
Back to top of page
There are 6
helices in PDB entry 1HDD. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
C1 | C
| 10 |
22 | Right-handed alpha |
Helix 2 |
C2 | C
| 28 |
38 | Right-handed alpha |
Helix 3 |
C3 | C
| 42 |
58 | Right-handed alpha |
Helix 4 |
D1 | D
| 10 |
22 | Right-handed alpha |
Helix 5 |
D2 | D
| 28 |
38 | Right-handed alpha |
Helix 6 |
D3 | D
| 42 |
58 | Right-handed alpha |
Back to top of page
There are no sheets in PDB entry
1HDD
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il