Analysis of interatomic Contacts of Structural Units in PDB entry:
1HNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HNX entry

There are 22 chains in PDB entry 1HNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
U 5 A 1534
X
C 1 U 6
B
VAL 7GLN 240
C
GLY 2VAL 207
D
GLY 2ARG 209
E
ASP 5GLY 154
F
MET 1ALA 101
G
ALA 2TRP 156
H
MET 1TRP 138
I
GLU 2ARG 128
J
LYS 3THR 100
K
LYS 11SER 129
L
PRO 5ALA 128
M
ALA 2LYS 126
N
ALA 2TRP 61
O
PRO 2GLY 89
P
MET 1ALA 88
Q
PRO 2ALA 105
R
PRO 16LYS 88
S
PRO 2ARG 81
T
ARG 8ALA 106
V
GLY 2LYS 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 92 helices in PDB entry 1HNX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
11 15Right-handed 310
Helix 2
2
B
25 30Right-handed 310
Helix 3
3
B
43 63Right-handed alpha
Helix 4
4
B
74 88Right-handed alpha
Helix 5
5
B
104 122Right-handed alpha
Helix 6
6
B
125 129Right-handed 310
Helix 7
7
B
133 149Right-handed alpha
Helix 8
8
B
170 180Right-handed alpha
Helix 9
9
B
193 197Right-handed 310
Helix 10
10
B
207 226Right-handed alpha
Helix 11
11
B
233 240Right-handed 310
Helix 12
12
C
6 12Right-handed alpha
Helix 13
13
C
25 48Right-handed alpha
Helix 14
14
C
49 51Right-handed 310
Helix 15
15
C
72 78Right-handed alpha
Helix 16
16
C
82 91Right-handed alpha
Helix 17
17
C
92 94Right-handed 310
Helix 18
18
C
108 111Right-handed 310
Helix 19
19
C
112 126Right-handed alpha
Helix 20
20
C
129 144Right-handed alpha
Helix 21
21
C
156 160Right-handed 310
Helix 22
22
D
10 15Right-handed alpha
Helix 23
23
D
52 67Right-handed alpha
Helix 24
24
D
71 85Right-handed alpha
Helix 25
25
D
88 99Right-handed alpha
Helix 26
26
D
100 108Right-handed alpha
Helix 27
27
D
113 123Right-handed alpha
Helix 28
28
D
149 154Right-handed alpha
Helix 29
29
D
155 165Right-handed alpha
Helix 30
30
D
190 194Right-handed 310
Helix 31
31
D
199 207Right-handed alpha
Helix 32
32
E
50 64Right-handed alpha
Helix 33
33
E
103 113Right-handed alpha
Helix 34
34
E
127 142Right-handed alpha
Helix 35
35
E
144 152Right-handed alpha
Helix 36
36
F
15 33Right-handed alpha
Helix 37
37
F
68 70Right-handed 310
Helix 38
38
F
71 82Right-handed alpha
Helix 39
39
G
20 31Right-handed alpha
Helix 40
40
G
35 48Right-handed alpha
Helix 41
41
G
48 53Right-handed alpha
Helix 42
42
G
57 69Right-handed alpha
Helix 43
43
G
92 109Right-handed alpha
Helix 44
44
G
115 130Right-handed alpha
Helix 45
45
G
132 145Right-handed alpha
Helix 46
46
H
4 19Right-handed alpha
Helix 47
47
H
29 42Right-handed alpha
Helix 48
48
H
102 107Right-handed 310
Helix 49
49
H
121 127Right-handed alpha
Helix 50
50
I
32 37Right-handed alpha
Helix 51
51
I
42 46Right-handed 310
Helix 52
52
I
47 52Right-handed alpha
Helix 53
53
I
69 89Right-handed alpha
Helix 54
54
I
92 97Right-handed alpha
Helix 55
55
J
14 28Right-handed alpha
Helix 56
56
J
80 85Right-handed alpha
Helix 57
57
K
52 56Right-handed 310
Helix 58
58
K
57 75Right-handed alpha
Helix 59
59
K
91 102Right-handed alpha
Helix 60
60
K
122 126Right-handed 310
Helix 61
61
L
6 14Right-handed alpha
Helix 62
62
M
14 19Right-handed alpha
Helix 63
63
M
20 22Right-handed 310
Helix 64
64
M
26 37Right-handed alpha
Helix 65
65
M
45 48Right-handed 310
Helix 66
66
M
49 62Right-handed alpha
Helix 67
67
M
66 82Right-handed alpha
Helix 68
68
M
86 95Right-handed alpha
Helix 69
69
N
8 12Right-handed 310
Helix 70
70
N
16 20Right-handed 310
Helix 71
71
N
29 32Right-handed 310
Helix 72
72
N
34 38Right-handed 310
Helix 73
73
N
40 51Right-handed alpha
Helix 74
74
O
4 16Right-handed alpha
Helix 75
75
O
24 45Right-handed alpha
Helix 76
76
O
49 74Right-handed alpha
Helix 77
77
O
74 86Right-handed alpha
Helix 78
78
P
52 61Right-handed alpha
Helix 79
79
P
67 77Right-handed alpha
Helix 80
80
Q
81 96Right-handed alpha
Helix 81
81
R
36 41Right-handed alpha
Helix 82
82
R
52 57Right-handed alpha
Helix 83
83
R
61 77Right-handed alpha
Helix 84
84
S
12 20Right-handed alpha
Helix 85
85
S
20 25Right-handed alpha
Helix 86
86
S
41 45Right-handed 310
Helix 87
87
S
63 67Right-handed 310
Helix 88
88
S
71 75Right-handed 310
Helix 89
89
T
13 46Right-handed alpha
Helix 90
90
T
48 67Right-handed alpha
Helix 91
91
T
74 93Right-handed alpha
Helix 92
92
V
8 16Right-handed alpha
Back to top of page

There are 22 sheets in PDB entry 1HNX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
32 35first strand
Strand 2
B
40 42anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
92 93first strand
Strand 2
B
69 71parallel
Strand 3
B
162 164parallel
Strand 4
B
184 186parallel
Strand 5
B
199 200parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
69 70first strand
Strand 2
C
104 105parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
169 170first strand
Strand 2
C
148 153anti-parallel
Strand 3
C
198 203anti-parallel
Strand 4
C
182 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
144 145first strand
Strand 2
D
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
7 14first strand
Strand 2
E
28 35anti-parallel
Strand 3
E
40 48anti-parallel
Strand 4
E
66 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
19 20first strand
Strand 2
E
23 24anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
80 84first strand
Strand 2
E
87 93anti-parallel
Strand 3
E
118 124anti-parallel
Strand 4
E
100 101parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
73 76first strand
Strand 2
G
87 90anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
45 53first strand
Strand 2
H
56 63anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
117 120first strand
Strand 2
H
109 114anti-parallel
Strand 3
H
131 138anti-parallel
Strand 4
H
82 85anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
117 120first strand
Strand 2
H
109 114anti-parallel
Strand 3
H
131 138anti-parallel
Strand 4
H
94 95anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
4 6first strand
Strand 2
I
17 19anti-parallel
Strand 3
I
61 63anti-parallel
Strand 4
I
26 28parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
5 8first strand
Strand 2
J
96 99anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
43 46first strand
Strand 2
J
63 67anti-parallel
Strand 3
N
56 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
39 44first strand
Strand 2
K
27 33anti-parallel
Strand 3
K
16 24anti-parallel
Strand 4
K
79 86parallel
Strand 5
K
104 107parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
109 110first strand
Strand 2
R
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
82 85first strand
Strand 2
L
33 37anti-parallel
Strand 3
L
57 60anti-parallel
Strand 4
L
65 69anti-parallel
Strand 5
L
96 99parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
42 43first strand
Strand 2
L
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
34 39first strand
Strand 2
P
17 22anti-parallel
Strand 3
P
3 5anti-parallel
Strand 4
P
65 66parallel
Back to list of sheets
Back to top of page

There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
5 12first strand
Strand 2
Q
18 28anti-parallel
Strand 3
Q
35 45anti-parallel
Strand 4
Q
69 78parallel
Strand 5
Q
56 66anti-parallel
Strand 6
Q
5 12anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
51 52first strand
Strand 2
S
57 58anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il