Analysis of interatomic Contacts of Structural Units in PDB entry:
1IJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1IJI entry

There is 1 chain in PDB entry 1IJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3VAL 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1IJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
11 17Right-handed alpha
Helix 3
3
A
60 72Right-handed alpha
Helix 4
4
A
74 76Right-handed 310
Helix 5
5
A
82 96Right-handed alpha
Helix 6
6
A
111 121Right-handed alpha
Helix 7
7
A
136 142Right-handed alpha
Helix 8
8
A
164 176Right-handed alpha
Helix 9
9
A
187 191Right-handed 310
Helix 10
10
A
191 195Right-handed 310
Helix 11
11
A
196 203Right-handed 310
Helix 12
12
A
218 222Right-handed 310
Helix 13
13
A
229 238Right-handed alpha
Helix 14
14
A
246 257Right-handed alpha
Helix 15
15
A
258 284Right-handed alpha
Helix 16
16
A
306 317Right-handed alpha
Helix 17
17
A
340 353Right-handed alpha
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There are 3 sheets in PDB entry 1IJI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
319 320parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
224 228anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
180 184parallel
Strand 5
A
147 153parallel
Strand 6
A
102 105parallel
Strand 7
A
123 126parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
299 304anti-parallel
Strand 3
A
333 337anti-parallel
Strand 4
A
322 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il