Analysis of interatomic Contacts of Structural Units in PDB entry:
1IN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1IN8 entry

There is 1 chain in PDB entry 1IN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 17PRO 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1IN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 27Right-handed 310
Helix 2
2
A
30 48Right-handed alpha
Helix 3
3
A
63 76Right-handed alpha
Helix 4
4
A
89 99Right-handed alpha
Helix 5
5
A
111 114Right-handed 310
Helix 6
6
A
115 129Right-handed alpha
Helix 7
7
A
159 163Right-handed 310
Helix 8
8
A
164 169Right-handed alpha
Helix 9
9
A
181 196Right-handed alpha
Helix 10
10
A
201 211Right-handed alpha
Helix 11
11
A
215 234Right-handed alpha
Helix 12
12
A
239 251Right-handed alpha
Helix 13
13
A
258 271Right-handed alpha
Helix 14
14
A
278 287Right-handed alpha
Helix 15
15
A
289 296Right-handed alpha
Helix 16
16
A
297 304Right-handed alpha
Helix 17
17
A
317 324Right-handed alpha
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There are 2 sheets in PDB entry 1IN8. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
105 109parallel
Strand 3
A
152 157parallel
Strand 4
A
54 57parallel
Strand 5
A
173 176parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
313 316anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il