Analysis of interatomic Contacts of Structural Units in PDB entry:
1J10

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1J10 entry

There are 4 chains in PDB entry 1J10 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	TRP 516
B	ALA 1	TRP 516
C	ALA 1	TRP 516
D	ALA 1	TRP 516

There are 86 helices in PDB entry 1J10. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1	5	Right-handed 310
Helix 2	2	A	21	26	Right-handed alpha
Helix 3	3	A	27	41	Right-handed alpha
Helix 4	4	A	52	56	Right-handed alpha
Helix 5	5	A	65	78	Right-handed alpha
Helix 6	6	A	104	111	Right-handed 310
Helix 7	7	A	134	154	Right-handed alpha
Helix 8	8	A	155	160	Right-handed 310
Helix 9	9	A	168	172	Right-handed 310
Helix 10	10	A	196	212	Right-handed alpha
Helix 11	11	A	213	222	Right-handed alpha
Helix 12	12	A	227	231	Right-handed 310
Helix 13	13	A	236	243	Right-handed alpha
Helix 14	14	A	244	246	Right-handed 310
Helix 15	15	A	247	281	Right-handed alpha
Helix 16	16	A	312	323	Right-handed alpha
Helix 17	17	A	345	361	Right-handed alpha
Helix 18	18	A	374	388	Right-handed alpha
Helix 19	19	A	397	403	Right-handed alpha
Helix 20	20	A	404	415	Right-handed alpha
Helix 21	21	A	443	447	Right-handed 310
Helix 22	22	B	1	5	Right-handed 310
Helix 23	23	B	21	26	Right-handed alpha
Helix 24	24	B	27	41	Right-handed alpha
Helix 25	25	B	52	56	Right-handed alpha
Helix 26	26	B	65	79	Right-handed alpha
Helix 27	27	B	104	111	Right-handed 310
Helix 28	28	B	134	154	Right-handed alpha
Helix 29	29	B	155	160	Right-handed 310
Helix 30	30	B	168	172	Right-handed 310
Helix 31	31	B	196	212	Right-handed alpha
Helix 32	32	B	213	222	Right-handed alpha
Helix 33	33	B	227	231	Right-handed 310
Helix 34	34	B	236	243	Right-handed alpha
Helix 35	35	B	244	246	Right-handed 310
Helix 36	36	B	247	281	Right-handed alpha
Helix 37	37	B	304	309	Right-handed alpha
Helix 38	38	B	312	324	Right-handed alpha
Helix 39	39	B	345	361	Right-handed alpha
Helix 40	40	B	374	388	Right-handed alpha
Helix 41	41	B	397	403	Right-handed alpha
Helix 42	42	B	404	415	Right-handed alpha
Helix 43	43	B	443	447	Right-handed 310
Helix 44	44	C	1	5	Right-handed 310
Helix 45	45	C	21	26	Right-handed alpha
Helix 46	46	C	27	41	Right-handed alpha
Helix 47	47	C	52	56	Right-handed alpha
Helix 48	48	C	65	78	Right-handed alpha
Helix 49	49	C	104	111	Right-handed 310
Helix 50	50	C	134	154	Right-handed alpha
Helix 51	51	C	155	160	Right-handed 310
Helix 52	52	C	168	172	Right-handed 310
Helix 53	53	C	196	212	Right-handed alpha
Helix 54	54	C	213	222	Right-handed alpha
Helix 55	55	C	227	231	Right-handed 310
Helix 56	56	C	236	243	Right-handed alpha
Helix 57	57	C	244	246	Right-handed 310
Helix 58	58	C	247	281	Right-handed alpha
Helix 59	59	C	304	309	Right-handed alpha
Helix 60	60	C	312	324	Right-handed alpha
Helix 61	61	C	345	360	Right-handed alpha
Helix 62	62	C	374	388	Right-handed alpha
Helix 63	63	C	397	403	Right-handed alpha
Helix 64	64	C	404	415	Right-handed alpha
Helix 65	65	C	443	447	Right-handed 310
Helix 66	66	D	1	5	Right-handed 310
Helix 67	67	D	21	26	Right-handed alpha
Helix 68	68	D	27	41	Right-handed alpha
Helix 69	69	D	52	56	Right-handed alpha
Helix 70	70	D	65	78	Right-handed alpha
Helix 71	71	D	104	111	Right-handed 310
Helix 72	72	D	134	154	Right-handed alpha
Helix 73	73	D	155	160	Right-handed 310
Helix 74	74	D	168	172	Right-handed 310
Helix 75	75	D	196	212	Right-handed alpha
Helix 76	76	D	213	222	Right-handed alpha
Helix 77	77	D	227	231	Right-handed 310
Helix 78	78	D	236	243	Right-handed alpha
Helix 79	79	D	244	246	Right-handed 310
Helix 80	80	D	247	277	Right-handed alpha
Helix 81	81	D	312	324	Right-handed alpha
Helix 82	82	D	345	361	Right-handed alpha
Helix 83	83	D	374	388	Right-handed alpha
Helix 84	84	D	397	403	Right-handed alpha
Helix 85	85	D	404	415	Right-handed alpha
Helix 86	86	D	443	447	Right-handed 310

There are 24 sheets in PDB entry 1J10. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	43	51	parallel
Strand 3	A	81	87	parallel
Strand 4	A	163	165	parallel
Strand 5	A	284	288	parallel
Strand 6	A	326	329	parallel
Strand 7	A	364	367	parallel
Strand 8	A	392	395	parallel
Strand 9	A	12	16	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	100	101	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	125	126	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	461	first strand
Strand 2	A	466	474	anti-parallel
Strand 3	A	419	427	anti-parallel
Strand 4	A	511	515	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	436	441	anti-parallel
Strand 3	A	479	486	anti-parallel
Strand 4	A	492	495	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	436	441	anti-parallel
Strand 3	A	479	486	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	43	51	parallel
Strand 3	B	81	87	parallel
Strand 4	B	163	165	parallel
Strand 5	B	284	288	parallel
Strand 6	B	326	329	parallel
Strand 7	B	364	367	parallel
Strand 8	B	392	395	parallel
Strand 9	B	12	16	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	100	101	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	125	126	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	467	474	anti-parallel
Strand 3	B	419	427	anti-parallel
Strand 4	B	511	515	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	436	441	anti-parallel
Strand 3	B	479	486	anti-parallel
Strand 4	B	492	495	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	436	441	anti-parallel
Strand 3	B	479	486	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	43	51	parallel
Strand 3	C	81	87	parallel
Strand 4	C	163	165	parallel
Strand 5	C	284	289	parallel
Strand 6	C	326	330	parallel
Strand 7	C	364	367	parallel
Strand 8	C	392	395	parallel
Strand 9	C	12	16	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	100	101	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	125	126	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	461	first strand
Strand 2	C	466	474	anti-parallel
Strand 3	C	419	427	anti-parallel
Strand 4	C	511	515	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	436	441	anti-parallel
Strand 3	C	479	486	anti-parallel
Strand 4	C	492	495	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	436	441	anti-parallel
Strand 3	C	479	486	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	43	51	parallel
Strand 3	D	81	87	parallel
Strand 4	D	163	165	parallel
Strand 5	D	284	288	parallel
Strand 6	D	326	329	parallel
Strand 7	D	364	367	parallel
Strand 8	D	392	395	parallel
Strand 9	D	12	16	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	100	101	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	125	126	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	459	461	first strand
Strand 2	D	466	474	anti-parallel
Strand 3	D	419	427	anti-parallel
Strand 4	D	511	515	parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	457	first strand
Strand 2	D	436	441	anti-parallel
Strand 3	D	479	486	anti-parallel
Strand 4	D	492	495	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	457	first strand
Strand 2	D	436	441	anti-parallel
Strand 3	D	479	486	anti-parallel
Strand 4	D	500	502	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1J10

Analysis of interatomic Contacts of Structural Units in PDB entry:
1J10