Analysis of interatomic Contacts of Structural Units in PDB entry:
1J1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J1B entry

There are 2 chains in PDB entry 1J1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 35ALA 388
B
PHE 523ALA 886
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 1J1B. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
95 103Right-handed alpha
Helix 2
2
A
139 149Right-handed alpha
Helix 3
3
A
154 174Right-handed alpha
Helix 4
4
A
183 185Right-handed 310
Helix 5
5
A
224 229Right-handed alpha
Helix 6
6
A
236 253Right-handed alpha
Helix 7
7
A
261 274Right-handed alpha
Helix 8
8
A
277 285Right-handed alpha
Helix 9
9
A
300 305Right-handed alpha
Helix 10
10
A
310 321Right-handed alpha
Helix 11
11
A
324 328Right-handed 310
Helix 12
12
A
330 336Right-handed alpha
Helix 13
13
A
337 345Right-handed 310
Helix 14
14
A
363 368Right-handed alpha
Helix 15
15
A
370 372Right-handed 310
Helix 16
16
A
373 378Right-handed alpha
Helix 17
17
B
595 604Right-handed alpha
Helix 18
18
B
639 649Right-handed alpha
Helix 19
19
B
654 674Right-handed alpha
Helix 20
20
B
683 685Right-handed 310
Helix 21
21
B
724 729Right-handed alpha
Helix 22
22
B
736 753Right-handed alpha
Helix 23
23
B
761 774Right-handed alpha
Helix 24
24
B
777 785Right-handed alpha
Helix 25
25
B
800 805Right-handed alpha
Helix 26
26
B
810 821Right-handed alpha
Helix 27
27
B
824 828Right-handed 310
Helix 28
28
B
830 836Right-handed alpha
Helix 29
29
B
837 845Right-handed 310
Helix 30
30
B
863 868Right-handed alpha
Helix 31
31
B
870 872Right-handed 310
Helix 32
32
B
873 878Right-handed alpha
Helix 33
33
B
879 884Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1J1B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
38 44first strand
Strand 2
A
52 64anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
81 88anti-parallel
Strand 5
A
125 133anti-parallel
Strand 6
A
112 120anti-parallel
Strand 7
A
38 44anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
137 138first strand
Strand 2
A
187 190anti-parallel
Strand 3
A
195 198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
177 178first strand
Strand 2
A
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
526 530first strand
Strand 2
B
536 544anti-parallel
Strand 3
B
552 564anti-parallel
Strand 4
B
568 575anti-parallel
Strand 5
B
581 589anti-parallel
Strand 6
B
626 633anti-parallel
Strand 7
B
612 619anti-parallel
Strand 8
B
536 544anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
637 638first strand
Strand 2
B
687 690anti-parallel
Strand 3
B
695 698anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
677 678first strand
Strand 2
B
705 706anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il