Analysis of interatomic Contacts of Structural Units in PDB entry:
1J1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J1U entry

There are 2 chains in PDB entry 1J1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
C 501 A 574
A
MET 1LEU 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1J1U. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 9Right-handed alpha
Helix 2
2
A
16 25Right-handed alpha
Helix 3
3
A
42 58Right-handed alpha
Helix 4
4
A
67 74Right-handed alpha
Helix 5
5
A
78 96Right-handed alpha
Helix 6
6
A
106 108Right-handed 310
Helix 7
7
A
111 125Right-handed alpha
Helix 8
8
A
126 134Right-handed alpha
Helix 9
9
A
146 163Right-handed alpha
Helix 10
10
A
173 184Right-handed alpha
Helix 11
11
A
218 229Right-handed alpha
Helix 12
12
A
239 248Right-handed alpha
Helix 13
13
A
258 262Right-handed 310
Helix 14
14
A
269 279Right-handed alpha
Helix 15
15
A
283 305Right-handed alpha
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There are 2 sheets in PDB entry 1J1U. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
13 15first strand
Strand 2
A
189 193anti-parallel
Strand 3
A
166 170parallel
Strand 4
A
29 35parallel
Strand 5
A
60 66parallel
Strand 6
A
101 104parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
253 255first strand
Strand 2
A
265 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il