Analysis of interatomic Contacts of Structural Units in PDB entry:
1J35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J35 entry

There are 12 chains in PDB entry 1J35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ALA 129
B
 ASP 201ALA 323
C
 TYR 401LEU 406
C
 PHE 409LEU 414
C
 ARG 416ARG 416
C
 CYS 418LYS 419
C
 LYS 422PHE 425
C
 ALA 428ARG 429
C
 VAL 431PHE 432
C
 ASN 434THR 435
C
 LYS 437THR 439
C
 PHE 441VAL 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1J35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 34Right-handed alpha
Helix 2
2
A
44 57Right-handed alpha
Helix 3
3
A
95 99Right-handed 310
Helix 4
4
A
106 110Right-handed 310
Helix 5
5
B
222 231Right-handed alpha
Helix 6
6
B
244 260Right-handed alpha
Helix 7
7
C
406 410Right-handed 310
Helix 8
8
C
413 419Right-handed alpha
Helix 9
9
C
424 433Right-handed alpha
Helix 10
10
C
434 444Right-handed alpha
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There are 4 sheets in PDB entry 1J35. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
12 21anti-parallel
Strand 3
A
123 129anti-parallel
Strand 4
A
38 39anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
102 105anti-parallel
Strand 3
A
66 72anti-parallel
Strand 4
B
277 279anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 209first strand
Strand 2
B
212 221anti-parallel
Strand 3
B
315 322anti-parallel
Strand 4
B
238 239anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 209first strand
Strand 2
B
212 221anti-parallel
Strand 3
B
315 322anti-parallel
Strand 4
B
263 265parallel
Strand 5
B
295 300anti-parallel
Strand 6
B
307 310anti-parallel
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