Analysis of interatomic Contacts of Structural Units in PDB entry:
1J8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J8M entry

There is 1 chain in PDB entry 1J8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 LEU 3HIS 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1J8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
F
3 16Right-handed alpha
Helix 2
2
F
20 39Right-handed alpha
Helix 3
3
F
42 60Right-handed alpha
Helix 4
4
F
67 84Right-handed alpha
Helix 5
5
F
112 125Right-handed alpha
Helix 6
6
F
139 153Right-handed alpha
Helix 7
7
F
164 179Right-handed alpha
Helix 8
8
F
196 212Right-handed alpha
Helix 9
9
F
223 227Right-handed 310
Helix 10
10
F
228 238Right-handed alpha
Helix 11
11
F
248 252Right-handed 310
Helix 12
12
F
254 264Right-handed alpha
Helix 13
13
F
285 292Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1J8M.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
156 157first strand
Strand 2
F
129 133parallel
Strand 3
F
183 187parallel
Strand 4
F
99 104parallel
Strand 5
F
215 221parallel
Strand 6
F
242 247parallel
Strand 7
F
269 273parallel
Strand 8
F
281 283anti-parallel
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