Analysis of interatomic Contacts of Structural Units in PDB entry:
1JD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JD7 entry

There is 1 chain in PDB entry 1JD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ASN 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1JD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
23 28Right-handed alpha
Helix 3
3
A
45 51Right-handed 310
Helix 4
4
A
63 77Right-handed alpha
Helix 5
5
A
112 115Right-handed 310
Helix 6
6
A
123 130Right-handed alpha
Helix 7
7
A
130 137Right-handed alpha
Helix 8
8
A
149 167Right-handed alpha
Helix 9
9
A
175 179Right-handed 310
Helix 10
10
A
180 189Right-handed alpha
Helix 11
11
A
210 215Right-handed 310
Helix 12
12
A
222 236Right-handed alpha
Helix 13
13
A
237 244Right-handed 310
Helix 14
14
A
245 249Right-handed 310
Helix 15
15
A
252 254Right-handed 310
Helix 16
16
A
264 268Right-handed 310
Helix 17
17
A
277 280Right-handed 310
Helix 18
18
A
281 294Right-handed alpha
Helix 19
19
A
335 338Right-handed 310
Helix 20
20
A
339 351Right-handed alpha
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There are 7 sheets in PDB entry 1JD7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
31 34parallel
Strand 3
A
80 86parallel
Strand 4
A
170 174parallel
Strand 5
A
196 199parallel
Strand 6
A
219 221parallel
Strand 7
A
256 258parallel
Strand 8
A
298 303parallel
Strand 9
A
5 8parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
143 144anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
102 103anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
325 326anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 363first strand
Strand 2
A
368 372anti-parallel
Strand 3
A
377 382anti-parallel
Strand 4
A
437 442anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
428 430anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 402first strand
Strand 2
A
420 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il