Analysis of interatomic Contacts of Structural Units in PDB entry:
1JE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JE1 entry

There are 6 chains in PDB entry 1JE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3SER 236
B
 ASN 2SER 236
C
 ASN 2SER 236
D
 PRO 3SER 236
E
 ASN 2SER 236
F
 PRO 3SER 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 1JE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 30Right-handed alpha
Helix 2
2
A
31 33Right-handed 310
Helix 3
3
A
41 45Right-handed 310
Helix 4
4
A
65 79Right-handed alpha
Helix 5
5
A
113 121Right-handed alpha
Helix 6
6
A
131 145Right-handed alpha
Helix 7
7
A
159 163Right-handed 310
Helix 8
8
A
164 173Right-handed alpha
Helix 9
9
A
182 194Right-handed alpha
Helix 10
10
A
216 235Right-handed alpha
Helix 11
11
B
22 30Right-handed alpha
Helix 12
12
B
31 33Right-handed 310
Helix 13
13
B
41 45Right-handed 310
Helix 14
14
B
65 79Right-handed alpha
Helix 15
15
B
113 121Right-handed alpha
Helix 16
16
B
131 145Right-handed alpha
Helix 17
17
B
159 163Right-handed 310
Helix 18
18
B
164 173Right-handed alpha
Helix 19
19
B
182 194Right-handed alpha
Helix 20
20
B
215 235Right-handed alpha
Helix 21
21
C
22 31Right-handed alpha
Helix 22
22
C
41 45Right-handed 310
Helix 23
23
C
65 79Right-handed alpha
Helix 24
24
C
113 121Right-handed alpha
Helix 25
25
C
131 145Right-handed alpha
Helix 26
26
C
159 163Right-handed 310
Helix 27
27
C
164 173Right-handed alpha
Helix 28
28
C
182 194Right-handed alpha
Helix 29
29
C
215 235Right-handed alpha
Helix 30
30
D
22 31Right-handed alpha
Helix 31
31
D
41 45Right-handed 310
Helix 32
32
D
65 79Right-handed alpha
Helix 33
33
D
113 121Right-handed alpha
Helix 34
34
D
131 145Right-handed alpha
Helix 35
35
D
159 163Right-handed 310
Helix 36
36
D
164 173Right-handed alpha
Helix 37
37
D
182 194Right-handed alpha
Helix 38
38
D
216 235Right-handed alpha
Helix 39
39
E
22 30Right-handed alpha
Helix 40
40
E
31 33Right-handed 310
Helix 41
41
E
41 45Right-handed 310
Helix 42
42
E
65 79Right-handed alpha
Helix 43
43
E
113 121Right-handed alpha
Helix 44
44
E
131 145Right-handed alpha
Helix 45
45
E
159 163Right-handed 310
Helix 46
46
E
164 173Right-handed alpha
Helix 47
47
E
182 194Right-handed alpha
Helix 48
48
E
215 235Right-handed alpha
Helix 49
49
F
22 31Right-handed alpha
Helix 50
50
F
41 45Right-handed 310
Helix 51
51
F
65 79Right-handed alpha
Helix 52
52
F
113 121Right-handed alpha
Helix 53
53
F
131 145Right-handed alpha
Helix 54
54
F
159 163Right-handed 310
Helix 55
55
F
164 173Right-handed alpha
Helix 56
56
F
182 194Right-handed alpha
Helix 57
57
F
215 235Right-handed alpha
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There are 6 sheets in PDB entry 1JE1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
55 61anti-parallel
Strand 4
A
16 20parallel
Strand 5
A
83 92parallel
Strand 6
A
176 180anti-parallel
Strand 7
A
149 156parallel
Strand 8
A
102 109parallel
Strand 9
A
196 206anti-parallel
Strand 10
A
83 92parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 40first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
55 61anti-parallel
Strand 4
B
16 20parallel
Strand 5
B
83 92parallel
Strand 6
B
176 180anti-parallel
Strand 7
B
149 156parallel
Strand 8
B
102 109parallel
Strand 9
B
196 206anti-parallel
Strand 10
B
83 92parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 40first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
55 61anti-parallel
Strand 4
C
16 20parallel
Strand 5
C
83 92parallel
Strand 6
C
176 180anti-parallel
Strand 7
C
149 156parallel
Strand 8
C
102 109parallel
Strand 9
C
196 206anti-parallel
Strand 10
C
83 92parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 40first strand
Strand 2
D
47 52anti-parallel
Strand 3
D
55 61anti-parallel
Strand 4
D
16 20parallel
Strand 5
D
83 92parallel
Strand 6
D
176 180anti-parallel
Strand 7
D
149 156parallel
Strand 8
D
102 109parallel
Strand 9
D
196 206anti-parallel
Strand 10
D
83 92parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 40first strand
Strand 2
E
47 52anti-parallel
Strand 3
E
55 61anti-parallel
Strand 4
E
16 20parallel
Strand 5
E
83 92parallel
Strand 6
E
176 180anti-parallel
Strand 7
E
149 156parallel
Strand 8
E
102 109parallel
Strand 9
E
196 206anti-parallel
Strand 10
E
83 92parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
34 40first strand
Strand 2
F
47 52anti-parallel
Strand 3
F
55 61anti-parallel
Strand 4
F
16 20parallel
Strand 5
F
83 92parallel
Strand 6
F
176 180anti-parallel
Strand 7
F
149 156parallel
Strand 8
F
102 109parallel
Strand 9
F
196 206anti-parallel
Strand 10
F
83 92parallel
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