Analysis of interatomic Contacts of Structural Units in PDB entry:
1JEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JEP entry

There are 2 chains in PDB entry 1JEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4GLU 215
B
 SER 4GLU 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1JEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 67Right-handed alpha
Helix 2
2
A
70 76Right-handed alpha
Helix 3
3
A
77 87Right-handed alpha
Helix 4
4
A
103 121Right-handed alpha
Helix 5
5
A
125 140Right-handed alpha
Helix 6
6
A
180 193Right-handed alpha
Helix 7
7
A
199 214Right-handed alpha
Helix 8
8
B
57 67Right-handed alpha
Helix 9
9
B
70 76Right-handed alpha
Helix 10
10
B
77 87Right-handed alpha
Helix 11
11
B
103 121Right-handed alpha
Helix 12
12
B
125 140Right-handed alpha
Helix 13
13
B
180 193Right-handed alpha
Helix 14
14
B
199 214Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1JEP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
27 40anti-parallel
Strand 3
A
43 55anti-parallel
Strand 4
A
91 97anti-parallel
Strand 5
A
149 155anti-parallel
Strand 6
A
159 165anti-parallel
Strand 7
A
176 179anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
27 40anti-parallel
Strand 3
B
43 55anti-parallel
Strand 4
B
91 97anti-parallel
Strand 5
B
149 155anti-parallel
Strand 6
B
159 165anti-parallel
Strand 7
B
176 179anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
143 144anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il