Analysis of interatomic Contacts of Structural Units in PDB entry:
1JFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JFS entry

There are 2 chains in PDB entry 1JFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 T 699 T 715
A
 ALA 2ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1JFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
14 24Right-handed alpha
Helix 3
3
A
29 43Right-handed alpha
Helix 4
4
A
48 57Right-handed alpha
Helix 5
5
A
71 88Right-handed alpha
Helix 6
6
A
100 115Right-handed alpha
Helix 7
7
A
127 136Right-handed alpha
Helix 8
8
A
161 175Right-handed alpha
Helix 9
9
A
190 208Right-handed alpha
Helix 10
10
A
212 215Right-handed 310
Helix 11
11
A
222 235Right-handed alpha
Helix 12
12
A
247 261Right-handed alpha
Helix 13
13
A
279 283Right-handed 310
Helix 14
14
A
294 311Right-handed alpha
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There are 3 sheets in PDB entry 1JFS. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
61 66parallel
Strand 3
A
118 121parallel
Strand 4
A
142 144parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
318 320parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
242 245parallel
Strand 3
A
270 275parallel
Strand 4
A
289 291parallel
Strand 5
A
324 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il