Analysis of interatomic Contacts of Structural Units in PDB entry:
1JG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JG3 entry

There are 6 chains in PDB entry 1JG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 14LYS 228
B
 GLU 14LYS 228
C
 VAL 1PRO 3
C
 HIS 5ALA 6
D
 VAL 1PRO 3
D
 HIS 5ALA 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1JG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 31Right-handed alpha
Helix 2
2
A
36 46Right-handed alpha
Helix 3
3
A
47 52Right-handed 310
Helix 4
4
A
53 60Right-handed 310
Helix 5
5
A
69 71Right-handed 310
Helix 6
6
A
76 88Right-handed alpha
Helix 7
7
A
103 114Right-handed alpha
Helix 8
8
A
123 137Right-handed alpha
Helix 9
9
A
148 152Right-handed 310
Helix 10
10
A
153 157Right-handed 310
Helix 11
11
A
172 178Right-handed alpha
Helix 12
12
B
14 31Right-handed alpha
Helix 13
13
B
36 46Right-handed alpha
Helix 14
14
B
47 52Right-handed 310
Helix 15
15
B
53 60Right-handed 310
Helix 16
16
B
76 88Right-handed alpha
Helix 17
17
B
103 114Right-handed alpha
Helix 18
18
B
123 137Right-handed alpha
Helix 19
19
B
148 152Right-handed 310
Helix 20
20
B
153 157Right-handed 310
Helix 21
21
B
172 178Right-handed alpha
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There are 4 sheets in PDB entry 1JG3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
72 74anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
117 121parallel
Strand 3
A
95 98parallel
Strand 4
A
159 164parallel
Strand 5
A
179 189parallel
Strand 6
A
196 203anti-parallel
Strand 7
A
208 216anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
72 74anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
117 121parallel
Strand 3
B
95 98parallel
Strand 4
B
159 164parallel
Strand 5
B
179 189parallel
Strand 6
B
196 204anti-parallel
Strand 7
B
207 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il