Analysis of interatomic Contacts of Structural Units in PDB entry:
1JG4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JG4 entry

There is 1 chain in PDB entry 1JG4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 14LYS 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1JG4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
14 31Right-handed alpha
Helix 2
2
A
36 46Right-handed alpha
Helix 3
3
A
47 52Right-handed 310
Helix 4
4
A
53 60Right-handed 310
Helix 5
5
A
69 71Right-handed 310
Helix 6
6
A
76 88Right-handed alpha
Helix 7
7
A
103 114Right-handed alpha
Helix 8
8
A
123 137Right-handed alpha
Helix 9
9
A
148 152Right-handed 310
Helix 10
10
A
153 157Right-handed 310
Helix 11
11
A
172 178Right-handed alpha
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There are 2 sheets in PDB entry 1JG4. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 67first strand
Strand 2
A
73 74anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
142 146first strand
Strand 2
A
117 121parallel
Strand 3
A
95 98parallel
Strand 4
A
159 164parallel
Strand 5
A
179 190parallel
Strand 6
A
196 204anti-parallel
Strand 7
A
207 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il