Analysis of interatomic Contacts of Structural Units in PDB entry:
1JIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JIB entry

There are 2 chains in PDB entry 1JIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 585
B
 MET 1ARG 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 1JIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
117 121Right-handed 310
Helix 3
3
A
125 130Right-handed alpha
Helix 4
4
A
137 141Right-handed 310
Helix 5
5
A
171 178Right-handed alpha
Helix 6
6
A
178 186Right-handed alpha
Helix 7
7
A
218 231Right-handed alpha
Helix 8
8
A
249 259Right-handed alpha
Helix 9
9
A
260 262Right-handed 310
Helix 10
10
A
264 268Right-handed 310
Helix 11
11
A
300 316Right-handed alpha
Helix 12
12
A
326 330Right-handed 310
Helix 13
13
A
331 346Right-handed alpha
Helix 14
14
A
373 385Right-handed alpha
Helix 15
15
A
390 403Right-handed alpha
Helix 16
16
A
406 411Right-handed alpha
Helix 17
17
A
424 429Right-handed alpha
Helix 18
18
A
432 444Right-handed alpha
Helix 19
19
A
455 459Right-handed 310
Helix 20
20
A
475 479Right-handed 310
Helix 21
21
A
480 497Right-handed alpha
Helix 22
22
A
498 503Right-handed alpha
Helix 23
23
B
2 6Right-handed 310
Helix 24
24
B
105 109Right-handed 310
Helix 25
25
B
117 121Right-handed 310
Helix 26
26
B
125 130Right-handed alpha
Helix 27
27
B
137 142Right-handed alpha
Helix 28
28
B
171 186Right-handed alpha
Helix 29
29
B
218 231Right-handed alpha
Helix 30
30
B
249 259Right-handed alpha
Helix 31
31
B
260 262Right-handed 310
Helix 32
32
B
264 268Right-handed 310
Helix 33
33
B
300 316Right-handed alpha
Helix 34
34
B
326 330Right-handed 310
Helix 35
35
B
331 346Right-handed alpha
Helix 36
36
B
359 363Right-handed 310
Helix 37
37
B
373 385Right-handed alpha
Helix 38
38
B
390 403Right-handed alpha
Helix 39
39
B
406 411Right-handed alpha
Helix 40
40
B
424 429Right-handed alpha
Helix 41
41
B
432 446Right-handed alpha
Helix 42
42
B
455 459Right-handed 310
Helix 43
43
B
466 470Right-handed 310
Helix 44
44
B
475 479Right-handed 310
Helix 45
45
B
480 496Right-handed alpha
Helix 46
46
B
498 503Right-handed alpha
Helix 47
47
B
546 550Right-handed 310
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There are 12 sheets in PDB entry 1JIB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
66 74anti-parallel
Strand 4
A
59 62anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
80 87anti-parallel
Strand 4
A
93 97anti-parallel
Strand 5
A
100 102anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
80 87anti-parallel
Strand 4
A
111 113anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
350 353parallel
Strand 3
A
321 324parallel
Strand 4
A
235 240parallel
Strand 5
A
189 192parallel
Strand 6
A
133 136parallel
Strand 7
A
449 453parallel
Strand 8
A
414 416parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
208 212anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 511first strand
Strand 2
A
516 523anti-parallel
Strand 3
A
526 533anti-parallel
Strand 4
A
578 582anti-parallel
Strand 5
A
554 555anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 544first strand
Strand 2
A
568 572anti-parallel
Strand 3
A
564 565anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
22 30anti-parallel
Strand 3
B
66 74anti-parallel
Strand 4
B
53 62anti-parallel
Strand 5
B
36 42anti-parallel
Strand 6
B
80 87anti-parallel
Strand 7
B
93 96anti-parallel
Strand 8
B
101 102anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
22 30anti-parallel
Strand 3
B
66 74anti-parallel
Strand 4
B
53 62anti-parallel
Strand 5
B
36 42anti-parallel
Strand 6
B
80 87anti-parallel
Strand 7
B
111 113anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 371first strand
Strand 2
B
350 353parallel
Strand 3
B
321 324parallel
Strand 4
B
235 240parallel
Strand 5
B
189 192parallel
Strand 6
B
133 136parallel
Strand 7
B
449 453parallel
Strand 8
B
414 416parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 511first strand
Strand 2
B
516 523anti-parallel
Strand 3
B
526 533anti-parallel
Strand 4
B
578 582anti-parallel
Strand 5
B
554 555anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 544first strand
Strand 2
B
568 573anti-parallel
Strand 3
B
564 565anti-parallel
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