Analysis of interatomic Contacts of Structural Units in PDB entry:
1JIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JIH entry

There are 2 chains in PDB entry 1JIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ILE 509
B
MET 1ILE 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 1JIH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
5 11Right-handed alpha
Helix 2
2
A
12 14Right-handed 310
Helix 3
3
A
17 21Right-handed 310
Helix 4
4
A
33 43Right-handed alpha
Helix 5
5
A
63 68Right-handed alpha
Helix 6
6
A
76 84Right-handed alpha
Helix 7
7
A
128 146Right-handed alpha
Helix 8
8
A
161 172Right-handed alpha
Helix 9
9
A
182 187Right-handed alpha
Helix 10
10
A
187 197Right-handed alpha
Helix 11
11
A
209 215Right-handed 310
Helix 12
12
A
232 257Right-handed alpha
Helix 13
13
A
267 276Right-handed alpha
Helix 14
14
A
287 289Right-handed 310
Helix 15
15
A
290 296Right-handed alpha
Helix 16
16
A
301 305Right-handed 310
Helix 17
17
A
305 309Right-handed 310
Helix 18
18
A
310 320Right-handed alpha
Helix 19
19
A
326 335Right-handed alpha
Helix 20
20
A
338 351Right-handed alpha
Helix 21
21
A
366 378Right-handed alpha
Helix 22
22
A
408 434Right-handed alpha
Helix 23
23
A
468 488Right-handed alpha
Helix 24
24
B
5 11Right-handed alpha
Helix 25
25
B
12 14Right-handed 310
Helix 26
26
B
17 21Right-handed 310
Helix 27
27
B
33 43Right-handed alpha
Helix 28
28
B
63 68Right-handed alpha
Helix 29
29
B
76 82Right-handed alpha
Helix 30
30
B
128 146Right-handed alpha
Helix 31
31
B
161 172Right-handed alpha
Helix 32
32
B
183 197Right-handed alpha
Helix 33
33
B
209 215Right-handed 310
Helix 34
34
B
232 257Right-handed alpha
Helix 35
35
B
267 278Right-handed alpha
Helix 36
36
B
287 289Right-handed 310
Helix 37
37
B
290 296Right-handed alpha
Helix 38
38
B
301 305Right-handed 310
Helix 39
39
B
310 313Right-handed 310
Helix 40
40
B
314 319Right-handed alpha
Helix 41
41
B
326 335Right-handed alpha
Helix 42
42
B
338 351Right-handed alpha
Helix 43
43
B
363 365Right-handed 310
Helix 44
44
B
366 378Right-handed alpha
Helix 45
45
B
408 435Right-handed alpha
Helix 46
46
B
465 467Right-handed 310
Helix 47
47
B
468 488Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1JIH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
149 153first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
26 30anti-parallel
Strand 4
A
261 265anti-parallel
Strand 5
A
283 285parallel
Strand 6
A
220 221parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 62first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
88 91parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 103first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
395 400first strand
Strand 2
A
498 508anti-parallel
Strand 3
A
438 448anti-parallel
Strand 4
A
454 460anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
149 153first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
26 30anti-parallel
Strand 4
B
261 265anti-parallel
Strand 5
B
283 285parallel
Strand 6
B
220 221parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 62first strand
Strand 2
B
51 55anti-parallel
Strand 3
B
88 91parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
102 103first strand
Strand 2
B
93 96anti-parallel
Strand 3
B
124 127anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
176 178first strand
Strand 2
B
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
395 400first strand
Strand 2
B
498 509anti-parallel
Strand 3
B
437 448anti-parallel
Strand 4
B
454 460anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il