Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1JJC entry

There are 2 chains in PDB entry 1JJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 85	LEU 350
B	MET 1	PRO 785

There are 36 helices in PDB entry 1JJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	101	116	Right-handed alpha
Helix 2	2	A	130	134	Right-handed alpha
Helix 3	3	A	135	138	Right-handed 310
Helix 4	4	A	143	149	Right-handed 310
Helix 5	5	A	180	190	Right-handed alpha
Helix 6	6	A	229	246	Right-handed alpha
Helix 7	7	A	272	275	Right-handed 310
Helix 8	8	A	287	300	Right-handed alpha
Helix 9	9	A	319	328	Right-handed alpha
Helix 10	10	A	331	335	Right-handed 310
Helix 11	11	A	339	344	Right-handed alpha
Helix 12	12	A	345	350	Right-handed 310
Helix 13	13	B	5	9	Right-handed alpha
Helix 14	14	B	17	29	Right-handed alpha
Helix 15	15	B	146	150	Right-handed 310
Helix 16	16	B	165	168	Right-handed 310
Helix 17	17	B	169	180	Right-handed alpha
Helix 18	18	B	227	237	Right-handed alpha
Helix 19	19	B	243	257	Right-handed alpha
Helix 20	20	B	266	268	Right-handed 310
Helix 21	21	B	339	350	Right-handed alpha
Helix 22	22	B	354	363	Right-handed alpha
Helix 23	23	B	368	385	Right-handed alpha
Helix 24	24	B	407	416	Right-handed alpha
Helix 25	25	B	420	431	Right-handed alpha
Helix 26	26	B	455	468	Right-handed alpha
Helix 27	27	B	469	472	Right-handed 310
Helix 28	28	B	482	486	Right-handed 310
Helix 29	29	B	489	506	Right-handed alpha
Helix 30	30	B	519	524	Right-handed alpha
Helix 31	31	B	538	542	Right-handed 310
Helix 32	32	B	548	563	Right-handed alpha
Helix 33	33	B	604	621	Right-handed alpha
Helix 34	34	B	656	663	Right-handed alpha
Helix 35	35	B	706	719	Right-handed alpha
Helix 36	36	B	757	774	Right-handed alpha

There are 16 sheets in PDB entry 1JJC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	194	203	parallel
Strand 3	A	215	225	anti-parallel
Strand 4	A	311	318	anti-parallel
Strand 5	A	276	286	anti-parallel
Strand 6	A	261	271	anti-parallel
Strand 7	A	251	255	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	173	175	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	B	532	533	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	168	169	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	154	158	anti-parallel
Strand 3	B	32	37	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	76	first strand
Strand 2	B	62	67	anti-parallel
Strand 3	B	45	55	anti-parallel
Strand 4	B	86	90	anti-parallel
Strand 5	B	116	117	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	108	first strand
Strand 2	B	111	114	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	264	first strand
Strand 2	B	331	337	anti-parallel
Strand 3	B	212	219	anti-parallel
Strand 4	B	387	389	anti-parallel
Strand 5	B	193	194	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	264	first strand
Strand 2	B	331	337	anti-parallel
Strand 3	B	212	219	anti-parallel
Strand 4	B	393	395	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	204	first strand
Strand 2	B	271	276	parallel
Strand 3	B	298	304	anti-parallel
Strand 4	B	307	313	anti-parallel
Strand 5	B	317	318	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	290	292	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	442	445	anti-parallel
Strand 3	B	434	436	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	509	first strand
Strand 2	B	567	577	parallel
Strand 3	B	581	591	anti-parallel
Strand 4	B	669	675	anti-parallel
Strand 5	B	648	655	anti-parallel
Strand 6	B	634	644	anti-parallel
Strand 7	B	624	628	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	516	first strand
Strand 2	B	543	544	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	722	731	first strand
Strand 2	B	740	749	anti-parallel
Strand 3	B	693	697	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	722	731	first strand
Strand 2	B	740	749	anti-parallel
Strand 3	B	700	702	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1JJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJC