Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JJF entry

There is 1 chain in PDB entry 1JJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30ASP 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1JJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
103 114Right-handed alpha
Helix 2
2
A
136 148Right-handed alpha
Helix 3
3
A
148 157Right-handed alpha
Helix 4
4
A
162 164Right-handed 310
Helix 5
5
A
172 184Right-handed alpha
Helix 6
6
A
203 208Right-handed alpha
Helix 7
7
A
212 219Right-handed alpha
Helix 8
8
A
232 246Right-handed alpha
Helix 9
9
A
261 280Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1JJF.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 58first strand
Strand 2
A
63 71anti-parallel
Strand 3
A
121 125anti-parallel
Strand 4
A
83 87parallel
Strand 5
A
166 171parallel
Strand 6
A
191 195parallel
Strand 7
A
221 227parallel
Strand 8
A
251 255parallel
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