Analysis of interatomic Contacts of Structural Units in PDB entry:
1JKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JKI entry

There are 2 chains in PDB entry 1JKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 9LEU 533
B
 THR 10LEU 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 1JKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 90Right-handed alpha
Helix 2
2
A
108 113Right-handed alpha
Helix 3
3
A
138 140Right-handed 310
Helix 4
4
A
153 162Right-handed alpha
Helix 5
5
A
165 178Right-handed alpha
Helix 6
6
A
187 191Right-handed 310
Helix 7
7
A
192 196Right-handed 310
Helix 8
8
A
215 234Right-handed alpha
Helix 9
9
A
260 270Right-handed alpha
Helix 10
10
A
276 287Right-handed alpha
Helix 11
11
A
302 313Right-handed alpha
Helix 12
12
A
324 339Right-handed alpha
Helix 13
13
A
354 361Right-handed alpha
Helix 14
14
A
362 374Right-handed alpha
Helix 15
15
A
375 383Right-handed alpha
Helix 16
16
A
406 409Right-handed 310
Helix 17
17
A
423 425Right-handed 310
Helix 18
18
A
438 458Right-handed alpha
Helix 19
19
A
481 487Right-handed 310
Helix 20
20
A
502 518Right-handed alpha
Helix 21
21
A
527 532Right-handed alpha
Helix 22
22
B
75 90Right-handed alpha
Helix 23
23
B
108 113Right-handed alpha
Helix 24
24
B
138 140Right-handed 310
Helix 25
25
B
153 162Right-handed alpha
Helix 26
26
B
165 172Right-handed alpha
Helix 27
27
B
172 178Right-handed alpha
Helix 28
28
B
187 191Right-handed 310
Helix 29
29
B
192 196Right-handed 310
Helix 30
30
B
215 235Right-handed alpha
Helix 31
31
B
260 270Right-handed alpha
Helix 32
32
B
276 287Right-handed alpha
Helix 33
33
B
302 312Right-handed alpha
Helix 34
34
B
324 338Right-handed alpha
Helix 35
35
B
354 361Right-handed alpha
Helix 36
36
B
362 373Right-handed alpha
Helix 37
37
B
376 383Right-handed alpha
Helix 38
38
B
406 409Right-handed 310
Helix 39
39
B
438 456Right-handed alpha
Helix 40
40
B
481 485Right-handed 310
Helix 41
41
B
502 518Right-handed alpha
Helix 42
42
B
527 532Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1JKI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
B
44 50parallel
Strand 3
B
34 39anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
25 40anti-parallel
Strand 3
A
44 59anti-parallel
Strand 4
A
459 464anti-parallel
Strand 5
A
475 476anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
25 40anti-parallel
Strand 3
A
44 59anti-parallel
Strand 4
B
11 14parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
66 71parallel
Strand 3
A
239 243parallel
Strand 4
A
292 294parallel
Strand 5
A
316 318parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
126 129anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 404first strand
Strand 2
A
342 352parallel
Strand 3
A
411 421anti-parallel
Strand 4
A
427 437anti-parallel
Strand 5
B
427 437anti-parallel
Strand 6
B
411 421anti-parallel
Strand 7
B
342 352anti-parallel
Strand 8
B
397 404parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
25 31anti-parallel
Strand 3
B
53 59anti-parallel
Strand 4
B
459 463anti-parallel
Strand 5
B
475 476anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 147first strand
Strand 2
B
66 71parallel
Strand 3
B
239 243parallel
Strand 4
B
292 294parallel
Strand 5
B
316 318parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 119first strand
Strand 2
B
125 129anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il