Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1JKW entry
There is 1 chain in PDB entry 1JKW
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
TRP 11 | LEU 287 |
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There are 14
helices in PDB entry 1JKW. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 16 |
36 | Right-handed alpha |
Helix 2 |
2 | A
| 50 |
70 | Right-handed alpha |
Helix 3 |
3 | A
| 77 |
93 | Right-handed alpha |
Helix 4 |
4 | A
| 101 |
115 | Right-handed alpha |
Helix 5 |
5 | A
| 122 |
128 | Right-handed alpha |
Helix 6 |
6 | A
| 133 |
153 | Right-handed alpha |
Helix 7 |
7 | A
| 163 |
177 | Right-handed alpha |
Helix 8 |
8 | A
| 179 |
181 | Right-handed 310 |
Helix 9 |
9 | A
| 184 |
200 | Right-handed alpha |
Helix 10 |
10 | A
| 202 |
206 | Right-handed 310 |
Helix 11 |
11 | A
| 209 |
224 | Right-handed alpha |
Helix 12 |
12 | A
| 231 |
235 | Right-handed alpha |
Helix 13 |
13 | A
| 245 |
260 | Right-handed 310 |
Helix 14 |
14 | A
| 267 |
282 | Right-handed alpha |
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There are no sheets in PDB entry
1JKW
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il