Analysis of interatomic Contacts of Structural Units in PDB entry:
1JN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JN9 entry

There are 6 chains in PDB entry 1JN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLU 62
A
 PRO 64GLU 159
B
 THR 179ARG 312
C
 GLY 2GLU 62
C
 PRO 64LYS 158
D
 THR 179GLU 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1JN9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 45Right-handed alpha
Helix 2
2
A
48 62Right-handed alpha
Helix 3
3
A
105 117Right-handed alpha
Helix 4
4
A
124 134Right-handed alpha
Helix 5
5
A
140 145Right-handed 310
Helix 6
6
A
146 159Right-handed alpha
Helix 7
7
B
232 239Right-handed alpha
Helix 8
8
B
240 251Right-handed alpha
Helix 9
9
B
255 266Right-handed alpha
Helix 10
10
B
266 271Right-handed alpha
Helix 11
11
C
21 45Right-handed alpha
Helix 12
12
C
48 62Right-handed alpha
Helix 13
13
C
105 117Right-handed alpha
Helix 14
14
C
124 134Right-handed alpha
Helix 15
15
C
140 145Right-handed 310
Helix 16
16
C
146 158Right-handed alpha
Helix 17
17
D
232 239Right-handed alpha
Helix 18
18
D
240 251Right-handed alpha
Helix 19
19
D
255 266Right-handed alpha
Helix 20
20
D
266 271Right-handed alpha
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There are 4 sheets in PDB entry 1JN9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 311first strand
Strand 2
B
294 301anti-parallel
Strand 3
A
5 13anti-parallel
Strand 4
B
180 185anti-parallel
Strand 5
B
191 197anti-parallel
Strand 6
A
82 88anti-parallel
Strand 7
A
93 100anti-parallel
Strand 8
A
121 123parallel
Strand 9
D
207 208anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
C
121 123anti-parallel
Strand 3
C
93 100parallel
Strand 4
C
82 88anti-parallel
Strand 5
D
191 197anti-parallel
Strand 6
D
180 185anti-parallel
Strand 7
C
5 13anti-parallel
Strand 8
D
294 301anti-parallel
Strand 9
D
307 309anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 220first strand
Strand 2
B
225 231anti-parallel
Strand 3
B
275 281anti-parallel
Strand 4
B
286 287anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
218 220first strand
Strand 2
D
225 231anti-parallel
Strand 3
D
275 281anti-parallel
Strand 4
D
286 287anti-parallel
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