Analysis of interatomic Contacts of Structural Units in PDB entry:
1JPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JPD entry

There is 1 chain in PDB entry 1JPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLY -2LEU 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1JPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
48 52Right-handed 310
Helix 2
2
X
54 64Right-handed alpha
Helix 3
3
X
65 71Right-handed alpha
Helix 4
4
X
74 82Right-handed alpha
Helix 5
5
X
85 102Right-handed alpha
Helix 6
6
X
106 112Right-handed alpha
Helix 7
7
X
129 143Right-handed alpha
Helix 8
8
X
156 168Right-handed alpha
Helix 9
9
X
185 196Right-handed alpha
Helix 10
10
X
210 215Right-handed 310
Helix 11
11
X
230 232Right-handed 310
Helix 12
12
X
233 238Right-handed alpha
Helix 13
13
X
247 252Right-handed alpha
Helix 14
14
X
253 267Right-handed alpha
Helix 15
15
X
279 287Right-handed alpha
Helix 16
16
X
288 293Right-handed 310
Helix 17
17
X
299 304Right-handed 310
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There are 3 sheets in PDB entry 1JPD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
3 12first strand
Strand 2
X
26 36anti-parallel
Strand 3
X
39 45anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
118 120first strand
Strand 2
X
318 320anti-parallel
Strand 3
X
313 315anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
123 125first strand
Strand 2
X
147 151parallel
Strand 3
X
172 176parallel
Strand 4
X
200 202parallel
Strand 5
X
222 224parallel
Strand 6
X
243 246parallel
Strand 7
X
270 273parallel
Strand 8
X
295 296parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il