Analysis of interatomic Contacts of Structural Units in PDB entry:
1JPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JPU entry

There is 1 chain in PDB entry 1JPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3HIS 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1JPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 21Right-handed 310
Helix 2
2
A
22 28Right-handed alpha
Helix 3
3
A
39 46Right-handed alpha
Helix 4
4
A
46 57Right-handed alpha
Helix 5
5
A
71 86Right-handed alpha
Helix 6
6
A
95 110Right-handed alpha
Helix 7
7
A
156 161Right-handed alpha
Helix 8
8
A
163 188Right-handed alpha
Helix 9
9
A
198 225Right-handed alpha
Helix 10
10
A
229 251Right-handed alpha
Helix 11
11
A
253 262Right-handed alpha
Helix 12
12
A
263 265Right-handed 310
Helix 13
13
A
267 272Right-handed 310
Helix 14
14
A
273 289Right-handed alpha
Helix 15
15
A
292 306Right-handed alpha
Helix 16
16
A
321 333Right-handed alpha
Helix 17
17
A
337 342Right-handed 310
Helix 18
18
A
346 366Right-handed alpha
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There are 2 sheets in PDB entry 1JPU. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
151 155parallel
Strand 3
A
112 117parallel
Strand 4
A
89 94parallel
Strand 5
A
33 38parallel
Strand 6
A
60 65parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
143 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il