Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQD entry

There are 2 chains in PDB entry 1JQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5ALA 292
B
 MET 5ALA 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1JQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
27 39Right-handed alpha
Helix 3
3
A
39 44Right-handed alpha
Helix 4
4
A
64 78Right-handed alpha
Helix 5
5
A
91 105Right-handed alpha
Helix 6
6
A
119 130Right-handed alpha
Helix 7
7
A
144 148Right-handed 310
Helix 8
8
A
150 161Right-handed alpha
Helix 9
9
A
177 187Right-handed alpha
Helix 10
10
A
188 190Right-handed 310
Helix 11
11
A
200 212Right-handed alpha
Helix 12
12
A
227 230Right-handed 310
Helix 13
13
A
234 246Right-handed alpha
Helix 14
14
A
249 254Right-handed alpha
Helix 15
15
A
255 266Right-handed alpha
Helix 16
16
B
11 25Right-handed alpha
Helix 17
17
B
27 39Right-handed alpha
Helix 18
18
B
39 45Right-handed alpha
Helix 19
19
B
64 78Right-handed alpha
Helix 20
20
B
91 105Right-handed alpha
Helix 21
21
B
119 128Right-handed alpha
Helix 22
22
B
144 148Right-handed 310
Helix 23
23
B
150 161Right-handed alpha
Helix 24
24
B
177 187Right-handed alpha
Helix 25
25
B
188 190Right-handed 310
Helix 26
26
B
200 212Right-handed alpha
Helix 27
27
B
227 231Right-handed 310
Helix 28
28
B
234 246Right-handed alpha
Helix 29
29
B
249 254Right-handed alpha
Helix 30
30
B
255 266Right-handed alpha
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There are 5 sheets in PDB entry 1JQD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
82 88parallel
Strand 3
A
53 59parallel
Strand 4
A
136 142parallel
Strand 5
A
162 173parallel
Strand 6
A
285 291anti-parallel
Strand 7
A
215 220anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
272 275anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
247 248anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
82 88parallel
Strand 3
B
53 59parallel
Strand 4
B
136 142parallel
Strand 5
B
162 173parallel
Strand 6
B
285 291anti-parallel
Strand 7
B
215 220anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 225first strand
Strand 2
B
278 282anti-parallel
Strand 3
B
272 275anti-parallel
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