Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQI entry

There are 2 chains in PDB entry 1JQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4ARG 387
B
 VAL 404ARG 787
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1JQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 29Right-handed alpha
Helix 2
2
A
32 40Right-handed alpha
Helix 3
3
A
43 54Right-handed alpha
Helix 4
4
A
61 65Right-handed 310
Helix 5
5
A
70 85Right-handed alpha
Helix 6
6
A
85 98Right-handed alpha
Helix 7
7
A
99 107Right-handed alpha
Helix 8
8
A
108 116Right-handed alpha
Helix 9
9
A
117 120Right-handed 310
Helix 10
10
A
178 184Right-handed 310
Helix 11
11
A
235 273Right-handed alpha
Helix 12
12
A
279 282Right-handed 310
Helix 13
13
A
283 313Right-handed alpha
Helix 14
14
A
317 344Right-handed alpha
Helix 15
15
A
345 348Right-handed 310
Helix 16
16
A
353 362Right-handed alpha
Helix 17
17
A
363 366Right-handed 310
Helix 18
18
A
370 387Right-handed alpha
Helix 19
19
B
411 429Right-handed alpha
Helix 20
20
B
432 440Right-handed alpha
Helix 21
21
B
443 454Right-handed alpha
Helix 22
22
B
461 465Right-handed 310
Helix 23
23
B
470 485Right-handed alpha
Helix 24
24
B
485 498Right-handed alpha
Helix 25
25
B
499 507Right-handed alpha
Helix 26
26
B
508 516Right-handed alpha
Helix 27
27
B
517 520Right-handed 310
Helix 28
28
B
538 542Right-handed 310
Helix 29
29
B
578 584Right-handed 310
Helix 30
30
B
635 673Right-handed alpha
Helix 31
31
B
683 713Right-handed alpha
Helix 32
32
B
717 744Right-handed alpha
Helix 33
33
B
745 749Right-handed 310
Helix 34
34
B
753 764Right-handed alpha
Helix 35
35
B
770 787Right-handed alpha
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There are 5 sheets in PDB entry 1JQI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
170 176parallel
Strand 3
A
186 192anti-parallel
Strand 4
A
229 230anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 148first strand
Strand 2
A
152 163anti-parallel
Strand 3
A
214 225anti-parallel
Strand 4
A
198 200anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 529first strand
Strand 2
B
570 576parallel
Strand 3
B
586 592anti-parallel
Strand 4
B
629 630anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
545 548first strand
Strand 2
B
552 563anti-parallel
Strand 3
B
614 625anti-parallel
Strand 4
B
598 600anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
674 675first strand
Strand 2
B
678 679anti-parallel
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