Analysis of interatomic Contacts of Structural Units in PDB entry:
1JSC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JSC entry

There are 2 chains in PDB entry 1JSC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 83LYS 648
B
 GLU 82VAL 649
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 1JSC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 105Right-handed alpha
Helix 2
2
A
115 117Right-handed 310
Helix 3
3
A
118 128Right-handed alpha
Helix 4
4
A
138 154Right-handed alpha
Helix 5
5
A
164 169Right-handed alpha
Helix 6
6
A
170 181Right-handed alpha
Helix 7
7
A
192 196Right-handed 310
Helix 8
8
A
205 210Right-handed alpha
Helix 9
9
A
222 224Right-handed 310
Helix 10
10
A
225 239Right-handed alpha
Helix 11
11
A
251 256Right-handed alpha
Helix 12
12
A
265 268Right-handed 310
Helix 13
13
A
281 299Right-handed alpha
Helix 14
14
A
308 312Right-handed 310
Helix 15
15
A
315 327Right-handed alpha
Helix 16
16
A
357 367Right-handed alpha
Helix 17
17
A
378 383Right-handed alpha
Helix 18
18
A
384 388Right-handed 310
Helix 19
19
A
389 398Right-handed alpha
Helix 20
20
A
409 413Right-handed 310
Helix 21
21
A
426 435Right-handed alpha
Helix 22
22
A
436 438Right-handed 310
Helix 23
23
A
444 456Right-handed alpha
Helix 24
24
A
472 487Right-handed alpha
Helix 25
25
A
498 508Right-handed alpha
Helix 26
26
A
527 539Right-handed alpha
Helix 27
27
A
550 557Right-handed alpha
Helix 28
28
A
559 567Right-handed alpha
Helix 29
29
A
604 613Right-handed alpha
Helix 30
30
A
621 635Right-handed alpha
Helix 31
31
B
93 105Right-handed alpha
Helix 32
32
B
115 117Right-handed 310
Helix 33
33
B
118 127Right-handed alpha
Helix 34
34
B
138 154Right-handed alpha
Helix 35
35
B
164 169Right-handed alpha
Helix 36
36
B
170 181Right-handed alpha
Helix 37
37
B
192 196Right-handed 310
Helix 38
38
B
205 210Right-handed alpha
Helix 39
39
B
222 224Right-handed 310
Helix 40
40
B
225 239Right-handed alpha
Helix 41
41
B
251 256Right-handed alpha
Helix 42
42
B
265 267Right-handed 310
Helix 43
43
B
278 298Right-handed alpha
Helix 44
44
B
308 313Right-handed 310
Helix 45
45
B
315 327Right-handed alpha
Helix 46
46
B
335 338Right-handed 310
Helix 47
47
B
357 364Right-handed alpha
Helix 48
48
B
384 388Right-handed 310
Helix 49
49
B
409 413Right-handed 310
Helix 50
50
B
426 433Right-handed alpha
Helix 51
51
B
445 457Right-handed alpha
Helix 52
52
B
472 487Right-handed alpha
Helix 53
53
B
498 508Right-handed alpha
Helix 54
54
B
527 539Right-handed alpha
Helix 55
55
B
550 557Right-handed alpha
Helix 56
56
B
559 567Right-handed alpha
Helix 57
57
B
604 613Right-handed alpha
Helix 58
58
B
621 635Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1JSC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
262 263anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
109 112parallel
Strand 3
A
157 161parallel
Strand 4
A
184 190parallel
Strand 5
A
244 250parallel
Strand 6
A
216 219parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
331 333parallel
Strand 3
A
302 306parallel
Strand 4
A
369 373parallel
Strand 5
A
402 407parallel
Strand 6
A
421 424parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 517first strand
Strand 2
A
491 495parallel
Strand 3
A
543 549parallel
Strand 4
A
571 576parallel
Strand 5
A
639 644parallel
Strand 6
A
615 619parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
262 263anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
109 112parallel
Strand 3
B
157 161parallel
Strand 4
B
184 190parallel
Strand 5
B
244 250parallel
Strand 6
B
216 219parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 351first strand
Strand 2
B
331 333parallel
Strand 3
B
303 306parallel
Strand 4
B
370 373parallel
Strand 5
B
404 406parallel
Strand 6
B
421 422parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
516 517first strand
Strand 2
B
491 495parallel
Strand 3
B
543 549parallel
Strand 4
B
571 576parallel
Strand 5
B
639 644parallel
Strand 6
B
615 619parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
583 587first strand
Strand 2
B
594 597anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il