Analysis of interatomic Contacts of Structural Units in PDB entry:
1JST


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JST entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 1JST (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 159
A
 HIS 161LEU 298
B
 VAL 175LEU 432
C
 MET 1TYR 159
C
 HIS 161LEU 298
D
 VAL 175LEU 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1JST. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 55Right-handed alpha
Helix 2
2
A
87 93Right-handed alpha
Helix 3
3
A
101 121Right-handed alpha
Helix 4
4
A
130 132Right-handed 310
Helix 5
5
A
166 168Right-handed 310
Helix 6
6
A
171 174Right-handed alpha
Helix 7
7
A
182 198Right-handed 310
Helix 8
8
A
208 219Right-handed alpha
Helix 9
9
A
230 232Right-handed 310
Helix 10
10
A
248 251Right-handed alpha
Helix 11
11
A
257 266Right-handed alpha
Helix 12
12
A
277 280Right-handed alpha
Helix 13
13
A
284 288Right-handed 310
Helix 14
14
B
176 192Right-handed 310
Helix 15
15
B
199 202Right-handed alpha
Helix 16
16
B
208 224Right-handed alpha
Helix 17
17
B
229 243Right-handed alpha
Helix 18
18
B
253 268Right-handed alpha
Helix 19
19
B
275 281Right-handed alpha
Helix 20
20
B
288 301Right-handed alpha
Helix 21
21
B
311 321Right-handed alpha
Helix 22
22
B
327 342Right-handed alpha
Helix 23
23
B
344 349Right-handed alpha
Helix 24
24
B
352 368Right-handed alpha
Helix 25
25
B
374 380Right-handed alpha
Helix 26
26
B
384 403Right-handed alpha
Helix 27
27
B
408 412Right-handed alpha
Helix 28
28
B
416 418Right-handed 310
Helix 29
29
B
421 423Right-handed 310
Helix 30
30
C
46 57Right-handed alpha
Helix 31
31
C
87 93Right-handed alpha
Helix 32
32
C
101 121Right-handed alpha
Helix 33
33
C
130 132Right-handed 310
Helix 34
34
C
166 168Right-handed 310
Helix 35
35
C
171 174Right-handed alpha
Helix 36
36
C
182 197Right-handed 310
Helix 37
37
C
208 219Right-handed alpha
Helix 38
38
C
230 232Right-handed 310
Helix 39
39
C
248 251Right-handed alpha
Helix 40
40
C
257 266Right-handed alpha
Helix 41
41
C
271 273Right-handed 310
Helix 42
42
C
277 282Right-handed alpha
Helix 43
43
C
284 288Right-handed 310
Helix 44
44
D
178 190Right-handed alpha
Helix 45
45
D
199 202Right-handed 310
Helix 46
46
D
208 225Right-handed alpha
Helix 47
47
D
229 245Right-handed alpha
Helix 48
48
D
253 268Right-handed alpha
Helix 49
49
D
275 282Right-handed alpha
Helix 50
50
D
288 301Right-handed alpha
Helix 51
51
D
311 321Right-handed alpha
Helix 52
52
D
327 342Right-handed alpha
Helix 53
53
D
344 349Right-handed alpha
Helix 54
54
D
352 368Right-handed alpha
Helix 55
55
D
374 380Right-handed alpha
Helix 56
56
D
388 403Right-handed alpha
Helix 57
57
D
408 414Right-handed alpha
Helix 58
58
D
421 423Right-handed 310
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There are 4 sheets in PDB entry 1JST. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
29 35anti-parallel
Strand 4
A
18 23anti-parallel
Strand 5
A
4 9anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
141 143anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 71first strand
Strand 2
C
75 81anti-parallel
Strand 3
C
29 36anti-parallel
Strand 4
C
19 23anti-parallel
Strand 5
C
4 9anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 135first strand
Strand 2
C
141 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il