Analysis of interatomic Contacts of Structural Units in PDB entry:
1JTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JTF entry

There is 1 chain in PDB entry 1JTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1PRO 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1JTF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
23 29Right-handed 310
Helix 3
3
A
36 57Right-handed alpha
Helix 4
4
A
72 86Right-handed alpha
Helix 5
5
A
100 104Right-handed 310
Helix 6
6
A
117 129Right-handed alpha
Helix 7
7
A
149 168Right-handed alpha
Helix 8
8
A
180 184Right-handed 310
Helix 9
9
A
225 242Right-handed alpha
Helix 10
10
A
257 268Right-handed alpha
Helix 11
11
A
278 295Right-handed alpha
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There are 3 sheets in PDB entry 1JTF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 4first strand
Strand 2
A
247 248parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
109 113first strand
Strand 2
A
90 95parallel
Strand 3
A
63 67parallel
Strand 4
A
133 137parallel
Strand 5
A
171 176parallel
Strand 6
A
208 213anti-parallel
Strand 7
A
194 197anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
188 191first strand
Strand 2
A
221 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il